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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G007590
Reference: TK1151 Chr: Chr03 Coordinates: 1826057-1828279 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1565 bp · TkA03G007590|TK1151|cDNA

AAGTTTTTTACTAATTTATTAATTTTTCTGAAACTTAAATGTTAAAACTTAAATGTTAAAAGTTAAAACACACGGAATAAACATCGGCTGACTCACTCCACCGGTTATCGGGAAACCATTGGCGGCCGTCGGTCTATGCAATAAACTATTCCACCGCTTTTATGTCTGCAAAAGTATTCATATATGGGTAATTTTATCTGGTTTCCTGGATTGTAATCCGAGATAGAAGATAATGGCAAGGAATCACAGTAGCAAACACA...

CDS

Download CDS FASTA

726 bp · TkA03G007590|TK1151|CDS

ATGGCAAGGAATCACAGTAGCAAACACATTTCCACAAAATCACTAATCCTATTGCTGTTCGCCGGTGTTCTTGTTGGTGGCGCTTTGATTTGCGATCATTTGTGGGCATCTTCTACTTCCACTGTGTATACTTCAGTTCATTATAACTGGATTCGCGAGAAAAATGATCTCGTAACCCTACCTACTTTCTCCAACGAAACTAATAAGATTGCAGAATTTAAAGATGGGAATGATAAAATCCCTGAGAGTTTAGTATCAGG...

Protein

Download Protein FASTA

241 aa · TkA03G007590|TK1151|PROTEIN

MARNHSSKHISTKSLILLLFAGVLVGGALICDHLWASSTSTVYTSVHYNWIREKNDLVTLPTFSNETNKIAEFKDGNDKIPESLVSGTFADLPAPETKWEEMAPAPVPRLDGASIQINELFYVFSGYRNLDHVHSHVDVYNFTSNKWEESFDTPKEMGNSHLGMASDGRYIYIVSGQQGPQCRTPPVSQTFVLDTRTRNWESFPPLPKPRYAPATQVWRGRLHVMGGARRTAIHQVEIIGV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G007590
TK1151 IDTkA03G007590
OH-1004 IDLXL04_009139
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)58.800
Protein coverage (%)TK1151 90.041 / OH-1004 51.643
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G007590
LocationChr03:1826057-1828279 (-)
DescriptionSimilar to At3g27220: Kelch repeat-containing protein At3g27220
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g27220 Kelch repeat-containing protein At3g27220. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_009139 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009061 anaerobic respiration Biological Process
GO:0071456 cellular response to hypoxia Biological Process
GO:0098813 nuclear chromosome segregation Biological Process
GO:0140014 mitotic nuclear division Biological Process
GO:1902410 mitotic cytokinetic process Biological Process
GO:0005737 cytoplasm Cellular Component
GO:0005768 endosome Cellular Component
GO:0005794 Golgi apparatus Cellular Component
GO:0005797 Golgi medial cisterna Cellular Component
GO:0005802 trans-Golgi network Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT3G27220
hsa:200942
hsa:55220
mmu:78267
rno:306589
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Golgi apparatus0.358
Rank 1 · TkA03G007590 · TK1151
Endoplasmic reticulum0.293
Rank 2 · TkA03G007590 · TK1151
Cytoplasm0.143
Rank 3 · TkA03G007590 · TK1151
Lysosome / Vacuole0.138
Rank 4 · TkA03G007590 · TK1151
Cell membrane0.108
Rank 5 · TkA03G007590 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24981Beta-prop_ATRN-LZTR117-41 aa
PF13418Beta-prop_TYW420-42 aa
PF07646Kelch_224-43 aa
PF31117DUF881543-75 aa
PF24996NANM91-176 aa
PF13418Beta-prop_TYW497-160 aa
PF25210Kelch_FKB9598-159 aa
PF13964Beta-prop_Calicin98-220 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G007590PF24981Beta-prop_ATRN-LZTR117414.5e-0833.4
TkA03G007590PF13418Beta-prop_TYW420420.01216.3
TkA03G007590PF07646Kelch_224437.4e-1039.0
TkA03G007590PF31117DUF881543750.05414.2
TkA03G007590PF24996NANM911762e-0730.9
TkA03G007590PF13418Beta-prop_TYW4971600.01216.3
TkA03G007590PF25210Kelch_FKB95981591.9e-1144.8
TkA03G007590PF13964Beta-prop_Calicin982203.5e-0627.0
TkA03G007590PF13415Beta-prop_FBX421022304e-0730.6
TkA03G007590PF24681Kelch_KLHDC2_KLHL20_DRC71032273.8e-1143.4
TkA03G007590PF07646Kelch_21091497.4e-1039.0
TkA03G007590PF01344Kelch_11091491.4e-0938.0
TkA03G007590PF31117DUF88151111490.05414.2
TkA03G007590PF24981Beta-prop_ATRN-LZTR11182314.5e-0833.4
TkA03G007590PF24996NANM1362102e-0730.9
TkA03G007590PF01344Kelch_11602071.4e-0938.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LK31Arabidopsis thalianasp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g2722053.700%Swiss-ProtHigh

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