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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G609420
Reference: TK1151 Chr: Chr02 Coordinates: 157177761-157181892 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2858 bp · TkA02G609420|TK1151|cDNA

CTCAGGATCACCGAGCACGTATTCGTTTCCTAATAATGTATCCAATCACATCGAAAATAGATAAAATCCCACCCTCAAAATAAAAGAAAAAGAAAAAGAACAGAGCGCCAAGTTCAATCGTCTTATGGGAGATAAGGTTTCTCCTCTCCTGATCCTCCTCCCCTTTTATTTTCTTTCACCGATTGTGTGGCTCACTTTGGCTAACAAGAGTTAATATAAAAAACTGAGCTCGGTTTTCATCGATAAACTTCTTCATAAAC...

CDS

Download CDS FASTA

2373 bp · TkA02G609420|TK1151|CDS

ATGTCTGCTCTTCAAGCTTTTCTCATCTGTAAACCCCCAACAGTCTCTAATCTAGTGCCTCACTCAAGACGTCTTCAATTTCATCGTATTCACTCTTTTAATTTGGGTTCTTTTCCTTCAACAAGTTATCGCAATAAAACTCGCCCTTTCTTCGCATTGCATCAAGATAATGTCGATTCGAATTCGGGTCTAGCTTCATCGAGTAATGGTAATCACAATCTAGCACGGGAGTCGGAGACCCAAGTTGTCGACTTTACCGA...

Protein

Download Protein FASTA

790 aa · TkA02G609420|TK1151|PROTEIN

MSALQAFLICKPPTVSNLVPHSRRLQFHRIHSFNLGSFPSTSYRNKTRPFFALHQDNVDSNSGLASSSNGNHNLARESETQVVDFTEGEVSNSEECLNEAEGEINGAGDEVGKEKGKLPLFVFLMGFFARMKSGFEKMLLSDGFSWWPFWRQEKKLELLISEADLNPKDAAKQSALLVELNKHSPESVIRRFEQRQYAVDSKGVAEYIRALVATNAIAEYLPDEQSGKPSSLPALLQELKQRASGNLDESFLNPGISERQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G609420
TK1151 IDTkA02G609420
OH-1004 IDLXL04_011839
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.600
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G609420
LocationChr02:157177761-157181892 (+)
DescriptionSimilar to FTSH11: ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g53170 Probable ATP-dependent zinc metallopeptidase.
FtsH11 protease plays a critical role in Arabidopsis thermotolerance.2006 · DOI: 10.1111/j.1365-313x.2006.02855.x
At2g26140 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os01g0618800 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Os01g0574500 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Os01g0574400 Probable ATP-dependent zinc metallopeptidase. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011839 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0009408 response to heat Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0010304 PSII associated light-harvesting complex II catabolic process Biological Process
GO:0045037 protein import into chloroplast stroma Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0009536 plastid Cellular Component
GO:0009941 chloroplast envelope Cellular Component
GO:0016020 membrane Cellular Component
KEGG gene cross-reference
ath:AT2G26140
ath:AT5G53170
dosa:Os01g0574400
dosa:Os01g0574500
dosa:Os01g0618800
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.923
Rank 1 · TkA02G609420 · TK1151
Mitochondrion0.082
Rank 2 · TkA02G609420 · TK1151
Cytoplasm0.031
Rank 3 · TkA02G609420 · TK1151
Nucleus0.029
Rank 4 · TkA02G609420 · TK1151
Cell membrane0.019
Rank 5 · TkA02G609420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_16174-240 aa
PF13238AAA_18184-197 aa
PF13401AAA_22225-284 aa
PF02367TsaE371-402 aa
PF06414Zeta_toxin374-399 aa
PF05496RuvB_N375-445 aa
PF13191AAA_16376-400 aa
PF06068TIP49377-412 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G609420PF13191AAA_161742400.0002522.3
TkA02G609420PF13238AAA_181841970.0117.0
TkA02G609420PF13401AAA_222252845.8e-0524.1
TkA02G609420PF02367TsaE3714020.212.3
TkA02G609420PF06414Zeta_toxin3743990.2611.4
TkA02G609420PF05496RuvB_N3754450.003317.9
TkA02G609420PF13191AAA_163764000.0002522.3
TkA02G609420PF06068TIP493774120.0009319.2
TkA02G609420PF06745ATPase3783940.06113.4
TkA02G609420PF01695IstB_IS213784000.1312.5
TkA02G609420PF13245AAA_193783980.5511.1
TkA02G609420PF00004AAA3795074.6e-42144.3
TkA02G609420PF07728AAA_53794474.3e-0524.2
TkA02G609420PF13401AAA_223794025.8e-0524.1
TkA02G609420PF13521AAA_283794120.0008620.3
TkA02G609420PF20720nSTAND33794750.001419.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FGM0Arabidopsis thalianasp|Q9FGM0|FTSHB_ARATH ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial75.300%Swiss-ProtHigh
O80983Arabidopsis thalianasp|O80983|FTSH4_ARATH ATP-dependent zinc metalloprotease FTSH 4, mitochondrial52.300%Swiss-ProtHigh
A2ZVG7Oryza sativa subsp. japonicasp|A2ZVG7|FTSH9_ORYSJ ATP-dependent zinc metalloprotease FTSH 9, chloroplastic/mitochondrial78.000%Swiss-ProtHigh
Q8LQJ8Oryza sativa subsp. japonicasp|Q8LQJ8|FTSH5_ORYSJ ATP-dependent zinc metalloprotease FTSH 5, mitochondrial51.800%Swiss-ProtHigh
Q8LQJ9Oryza sativa subsp. japonicasp|Q8LQJ9|FTSH4_ORYSJ ATP-dependent zinc metalloprotease FTSH 4, mitochondrial50.100%Swiss-ProtHigh

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