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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G597280
Reference: TK1151 Chr: Chr02 Coordinates: 154011284-154013362 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

578 bp · TkA02G597280|TK1151|cDNA

GAATGGTCTTATCCATATTCGTAACTTCCCTATCACAATAAATCAATAAAAATTGTACAAAATATCTACCACAGTCCACAAGGGTAGAAGTACAAGTAGCGGCGGTATCAATCCTTGTAAAGTTGCAGAGAGGTTGAGAGATCATGGGCAAGGGAGGAAAGAGTGACGGCTCAAATGGAGAAGAAGAAAACATGGCTGCTTGGCTGGTTTCCATCAACACCCTCAAGATCCAGCCCTTTAAGCTTCCACCTCTTGGGCCC...

CDS

Download CDS FASTA

1089 bp · TkA02G597280|TK1151|CDS

ATGGGCAAGGGAGGAAAGAGTGACGGCTCAAATGGAGAAGAAGAAAACATGGCTGCTTGGCTGGTTTCCATCAACACCCTCAAGATCCAGCCCTTTAAGCTTCCACCTCTTGGGCCCTATGATGTTAGAGTAAGGATGAAAGCTGTGGGTATCTGCGGTAGCGATGTTCACTATCTCAAGACATTAAGATGTGCAGATTTTGTGGTGAAAGAACCAATGGTTATCGGACATGAATGTGCTGGAGTGATTGAAGAAATTGG...

Protein

Download Protein FASTA

362 aa · TkA02G597280|TK1151|PROTEIN

MGKGGKSDGSNGEEENMAAWLVSINTLKIQPFKLPPLGPYDVRVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEEIGSNVEDLVPGDRVALEPGISCWRCTQCKEGRYNLCPDMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVAMLAARAFGAPRIVIVDVDDSRLSVAKQLGADEIIKVSINLQDVEGEVELIQKAMGGGVDVSFDCA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G597280
TK1151 IDTkA02G597280
OH-1004 IDLXL04_011965
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G597280
LocationChr02:154011284-154013362 (+)
DescriptionSimilar to SDH: Sorbitol dehydrogenase
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g51970 May catalyze NAD⁺-dependent oxidation of diverse sugar alcohols.
Sorbitol dehydrogenase is a cytosolic protein required for sorbitol metabolism in Arabidopsis thaliana.2013 · DOI: 10.1016/j.plantsci.2013.01.012

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011965 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006060 sorbitol metabolic process Biological Process
GO:0006062 sorbitol catabolic process Biological Process
GO:0009410 response to xenobiotic stimulus Biological Process
GO:0009725 response to hormone Biological Process
GO:0019640 D-glucuronate catabolic process to D-xylulose 5-phosphate Biological Process
GO:0030317 flagellated sperm motility Biological Process
GO:0031667 response to nutrient levels Biological Process
GO:0046183 L-idonate catabolic process Biological Process
GO:0046370 fructose biosynthetic process Biological Process
GO:0046686 response to cadmium ion Biological Process
GO:0046688 response to copper ion Biological Process
GO:0051160 xylitol catabolic process Biological Process
KEGG gene cross-reference
ath:AT5G51970
bta:508954
mmu:20322
rno:24788
vvi:100232980
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.590
Rank 1 · TkA02G597280 · TK1151
Nucleus0.222
Rank 2 · TkA02G597280 · TK1151
Mitochondrion0.164
Rank 3 · TkA02G597280 · TK1151
Peroxisome0.099
Rank 4 · TkA02G597280 · TK1151
Cell membrane0.090
Rank 5 · TkA02G597280 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240ADH_N38-152 aa
PF13738Pyr_redox_340-77 aa
PF00070Pyr_redox74-99 aa
PF07992Pyr_redox_274-99 aa
PF07562NCD3G95-119 aa
PF16912Glu_dehyd_C160-288 aa
PF01262AlaDh_PNT_C180-230 aa
PF07992Pyr_redox_2181-217 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G597280PF08240ADH_N381521.9e-2796.3
TkA02G597280PF13738Pyr_redox_340770.211.6
TkA02G597280PF00070Pyr_redox74990.01116.9
TkA02G597280PF07992Pyr_redox_274990.03814.1
TkA02G597280PF07562NCD3G951190.01316.0
TkA02G597280PF16912Glu_dehyd_C1602881.1e-0835.5
TkA02G597280PF01262AlaDh_PNT_C1802300.005316.9
TkA02G597280PF07992Pyr_redox_21812170.03814.1
TkA02G597280PF00899ThiF1812140.05213.4
TkA02G597280PF00070Pyr_redox1822110.01116.9
TkA02G597280PF03721UDPG_MGDP_dh_N1822190.4410.9
TkA02G597280PF03435Sacchrp_dh_NADP1832760.003518.4
TkA02G597280PF13649Methyltransf_251832390.1313.7
TkA02G597280PF13738Pyr_redox_31852110.211.6
TkA02G597280PF00107ADH_zinc_N1903211.8e-30106.3
TkA02G597280PF13602ADH_zinc_N_22233392.9e-0732.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJ95Arabidopsis thalianasp|Q9FJ95|DHSO_ARATH Sorbitol dehydrogenase85.400%Swiss-ProtHigh

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