LXL04_011965 | RubberDandelionOmics

Gene overview

LXL04_011965

Reference: OH-1004 Chr: Chr03 Coordinates: 3756655-3758317 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1089 bp · LXL04_011965|LXL04_011965|OH1004|cDNA

ATGGGCAAGGGAGGAAAGAGTGACGGCTCAAATGGAGAAGAAGAAAACATGGCTGCTTGGCTGGTTTCCATCAACACCCTCAAGATCCAGCCCTTTAAGCTTCCACCTCTTGGGCCCTATGATGTTAGAGTAAGGATGAAAGCTGTGGGTATCTGCGGTAGCGATGTTCACTATCTCAAGACATTAAGATGTGCAGATTTTGTGGTGAAAGAACCAATGGTTATCGGACATGAATGTGCTGGAGTGATTGAAGAAATTGG...

CDS

Download CDS FASTA

1089 bp · LXL04_011965|LXL04_011965|OH1004|CDS

ATGGGCAAGGGAGGAAAGAGTGACGGCTCAAATGGAGAAGAAGAAAACATGGCTGCTTGGCTGGTTTCCATCAACACCCTCAAGATCCAGCCCTTTAAGCTTCCACCTCTTGGGCCCTATGATGTTAGAGTAAGGATGAAAGCTGTGGGTATCTGCGGTAGCGATGTTCACTATCTCAAGACATTAAGATGTGCAGATTTTGTGGTGAAAGAACCAATGGTTATCGGACATGAATGTGCTGGAGTGATTGAAGAAATTGG...

Protein

Download Protein FASTA

362 aa · LXL04_011965|LXL04_011965|OH1004|PROTEIN

MGKGGKSDGSNGEEENMAAWLVSINTLKIQPFKLPPLGPYDVRVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEEIGSNVEDLVPGDRVALEPGISCWRCTQCKEGRYNLCPDMKFFATPPVHGSLANQVVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLVMGAGPIGLVAMLAARAFGAPRIVIVDVDDSRLSVAKQLGADEIIKVSINLQDVEGEVELIQKAMGGGVDVSFDCA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_011965`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_011965

Location Chr03:3756655-3758317 (-)

Description Similar to SDH: Sorbitol dehydrogenase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g51970`	May catalyze NAD⁺-dependent oxidation of diverse sugar alcohols.	Sorbitol dehydrogenase is a cytosolic protein required for sorbitol metabolism in Arabidopsis thaliana.2013 · DOI: 10.1016/j.plantsci.2013.01.012

Rice

No hit for this species in the current source table.

Functional annotation source

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Functional annotation source: OH1004 · LXL04_011965 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006060 sorbitol metabolic process Biological Process

GO:0006062 sorbitol catabolic process Biological Process

GO:0009410 response to xenobiotic stimulus Biological Process

GO:0009725 response to hormone Biological Process

GO:0019640 D-glucuronate catabolic process to D-xylulose 5-phosphate Biological Process

GO:0030317 flagellated sperm motility Biological Process

GO:0031667 response to nutrient levels Biological Process

GO:0046183 L-idonate catabolic process Biological Process

GO:0046370 fructose biosynthetic process Biological Process

GO:0046686 response to cadmium ion Biological Process

GO:0046688 response to copper ion Biological Process

GO:0051160 xylitol catabolic process Biological Process

KEGG gene cross-reference

ath:AT5G51970

bta:508954

mmu:20322

rno:24788

vvi:100232980

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.590

Rank 1 · LXL04_011965 · OH-1004

Nucleus0.222

Rank 2 · LXL04_011965 · OH-1004

Mitochondrion0.164

Rank 3 · LXL04_011965 · OH-1004

Peroxisome0.099

Rank 4 · LXL04_011965 · OH-1004

Cell membrane0.090

Rank 5 · LXL04_011965 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08240.18ADH_N38-152 aa

PF16912.12Glu_dehyd_C160-288 aa

PF00107.33ADH_zinc_N190-321 aa

PF13602.13ADH_zinc_N_2223-339 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_011965	`PF08240.18`	ADH_N	38	152	1.9e-27	96.3
LXL04_011965	`PF16912.12`	Glu_dehyd_C	160	288	1.1e-08	35.5
LXL04_011965	`PF00107.33`	ADH_zinc_N	190	321	1.8e-30	106.3
LXL04_011965	`PF13602.13`	ADH_zinc_N_2	223	339	2.9e-07	32.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9FJ95`	Arabidopsis thaliana	Sorbitol dehydrogenase	85.440%	Swiss-Prot	strong database homology

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