Gene Card
Gene overview
cDNA / CDS / Protein Sequences
987 bp · TkA02G560780|TK1151|cDNA
ATGTGGCCATTACTCTCTGGTGGCCAACCAGTAACTGTAGCCATGCATGATGCTCCTGTTAAGGAAGTTGATTGGATTCCAAAAATGTCTCTTTTGGTATCAGGAAGCTCGGACAAAACCCTAAGATACTGGGACTTGAGGCAACCTAATCCTGTTCACACTCAACAACTCCCTGAAAGATGCTATGCACTAAAAGTCAGACATCCATTAATGGTAGTTGGAACAGCAGATAGAAATCTCATAGTATTCAACTTGCAAAA...
987 bp · TkA02G560780|TK1151|CDS
ATGTGGCCATTACTCTCTGGTGGCCAACCAGTAACTGTAGCCATGCATGATGCTCCTGTTAAGGAAGTTGATTGGATTCCAAAAATGTCTCTTTTGGTATCAGGAAGCTCGGACAAAACCCTAAGATACTGGGACTTGAGGCAACCTAATCCTGTTCACACTCAACAACTCCCTGAAAGATGCTATGCACTAAAAGTCAGACATCCATTAATGGTAGTTGGAACAGCAGATAGAAATCTCATAGTATTCAACTTGCAAAA...
Protein
Download Protein FASTA328 aa · TkA02G560780|TK1151|PROTEIN
MWPLLSGGQPVTVAMHDAPVKEVDWIPKMSLLVSGSSDKTLRYWDLRQPNPVHTQQLPERCYALKVRHPLMVVGTADRNLIVFNLQNPQTEFKRITSPLKYQTRCVAAFPDQQGFLVGSIEGRVGVHHLDEQQNSKNFTLKCHREGNDIYSINSLNFHPDKDSKQRLKAMARCSAPIPCSSFNNDGSIFAYGEELVFLFIISVQLEATYGGQMEHLMVLFQCCVSSMILPDMLTKEVARGRVLLMYIWSHDMLIKSSGPG...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA02G560780 |
|---|---|
| TK1151 ID | TkA02G560780 |
| OH-1004 ID | LXL04_017062 |
| Relationship / confidence | Multi Source To Oh1004 / Complex relationship |
| Protein identity (%) | 70.700 |
| Protein coverage (%) | TK1151 58.232 / OH-1004 59.599Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA02G560780 | ||||||
|---|---|---|---|---|---|---|---|
| Location | Chr02:144838371-144840520 (-) | ||||||
| Description | Similar to RAE1: Protein RAE1 | ||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | ||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||
| GO annotations (OH1004 source) | GO:0000972 transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery Biological Process GO:0006405 RNA export from nucleus Biological Process GO:0006406 mRNA export from nucleus Biological Process GO:0006913 nucleocytoplasmic transport Biological Process GO:0015031 protein transport Biological Process GO:0051028 mRNA transport Biological Process GO:0051301 cell division Biological Process GO:0060236 regulation of mitotic spindle organization Biological Process GO:0001650 fibrillar center Cellular Component GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005643 nuclear pore Cellular Component | ||||||
| KEGG gene cross-reference | ath:AT1G80670 dre:393973 hsa:8480 pon:100171527 ssc:100125839 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25173Beta-prop_WDR3_1st2-84 aaPF25391WD40_Gbeta2-49 aaPF24817WD40_WDHD1_1st9-58 aaPF25175Beta-prop_WDR511-139 aaPF25174Beta-prop_THOC312-145 aaPF24814WD40_Prp1912-144 aaPF23381Beta-prop_IFT122_1st12-126 aaPF23775Beta-prop_RIG_2nd12-54 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA02G560780 | PF25173 | Beta-prop_WDR3_1st | 2 | 84 | 4.6e-11 | 43.5 |
| TkA02G560780 | PF25391 | WD40_Gbeta | 2 | 49 | 0.031 | 14.0 |
| TkA02G560780 | PF24817 | WD40_WDHD1_1st | 9 | 58 | 2.3e-11 | 44.1 |
| TkA02G560780 | PF25175 | Beta-prop_WDR5 | 11 | 139 | 9.8e-08 | 32.3 |
| TkA02G560780 | PF25174 | Beta-prop_THOC3 | 12 | 145 | 2.9e-16 | 60.0 |
| TkA02G560780 | PF24814 | WD40_Prp19 | 12 | 144 | 2.3e-11 | 44.0 |
| TkA02G560780 | PF23381 | Beta-prop_IFT122_1st | 12 | 126 | 2.9e-11 | 44.0 |
| TkA02G560780 | PF23775 | Beta-prop_RIG_2nd | 12 | 54 | 2.8e-06 | 27.7 |
| TkA02G560780 | PF25172 | Beta-prop_WDR3_2nd | 12 | 48 | 3.2e-05 | 24.0 |
| TkA02G560780 | PF24805 | EIF3I | 12 | 58 | 0.0018 | 18.2 |
| TkA02G560780 | PF24807 | WD40_CDC20-Fz | 13 | 144 | 8.8e-08 | 32.5 |
| TkA02G560780 | PF25171 | Beta-prop_WDR36-Utp21_1st | 13 | 44 | 6.8e-05 | 23.1 |
| TkA02G560780 | PF23409 | Beta-prop_EML | 14 | 75 | 0.15 | 12.3 |
| TkA02G560780 | PF00400 | WD40 | 15 | 45 | 3.1e-09 | 37.7 |
| TkA02G560780 | PF24796 | WDR55 | 15 | 136 | 1.1e-07 | 32.0 |
| TkA02G560780 | PF12894 | ANAPC4_WD40 | 15 | 56 | 0.026 | 15.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
| Protein | Organism | Description | Identity | Database | Confidence |
|---|---|---|---|---|---|
Q38942 | Arabidopsis thaliana | sp|Q38942|RAE1_ARATH Protein RAE1 | 68.300% | Swiss-Prot | Medium |