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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G406880
Reference: TK1151 Chr: Chr02 Coordinates: 103464772-103467546 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2331 bp · TkA02G406880|TK1151|cDNA

ATGCTATCTATTGTGTTACTACACCTTGAGACTACAACTGCCATCCAAAATGTAACAGTGGGAGGAAAAGCAGATGATGCTAACGGTGTCATCAAGAAGTGTTTTGGTAAGGAGAGATATGCCCTTCTTGACTTCAAAGCTCACCTTCATGACCCCAATGGGTATCTCTCCACATGGAGAGATGACGAAGAGGACTGCTGCAAATGGTTTGGAGTAACATGCAACAACCAAACCGGTCATGTCACAAGTCTTGAAATTAC...

CDS

Download CDS FASTA

2331 bp · TkA02G406880|TK1151|CDS

ATGCTATCTATTGTGTTACTACACCTTGAGACTACAACTGCCATCCAAAATGTAACAGTGGGAGGAAAAGCAGATGATGCTAACGGTGTCATCAAGAAGTGTTTTGGTAAGGAGAGATATGCCCTTCTTGACTTCAAAGCTCACCTTCATGACCCCAATGGGTATCTCTCCACATGGAGAGATGACGAAGAGGACTGCTGCAAATGGTTTGGAGTAACATGCAACAACCAAACCGGTCATGTCACAAGTCTTGAAATTAC...

Protein

Download Protein FASTA

776 aa · TkA02G406880|TK1151|PROTEIN

MLSIVLLHLETTTAIQNVTVGGKADDANGVIKKCFGKERYALLDFKAHLHDPNGYLSTWRDDEEDCCKWFGVTCNNQTGHVTSLEITSCGLVGKISRSLLNLTHLNHLDLSYNYLYGTIPTFIGSMTQLNYLHLAGNNLNGTIPPELGNITNLEVLSLGYVGRCRVENIEWLYHLSHLATLSMNGISLGKANYWVNVISSLQNLSYLSLRGCELSQVMYPYSSFLNSSSSIVVLDLGNNTLDSSMYHWLFSLTSNNLINL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G406880
TK1151 IDTkA02G406880
OH-1004 IDLXL04_004356
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)56.000
Protein coverage (%)TK1151 95.619 / OH-1004 96.263
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G406880
LocationChr02:103464772-103467546 (-)
DescriptionSimilar to EIX2: Receptor-like protein EIX2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g71400 Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Functional analyses of the CLAVATA2-like proteins and their domains that contribute to CLAVATA2 specificity.2010 · DOI: 10.1104/pp.109.148197
At4g13900 Receptor-like protein 49. No verified direct reference in this release
At1g71390 Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance. No verified direct reference in this release
At4g13810 Receptor-like protein 47. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_004356 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006898 receptor-mediated endocytosis Biological Process
GO:0007165 signal transduction Biological Process
GO:0010073 meristem maintenance Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0052544 defense response by callose deposition in cell wall Biological Process
GO:0140426 pathogen-associated molecular pattern receptor signaling pathway Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005768 endosome Cellular Component
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G71400
ath:AT4G04220
ath:AT5G46330
sly:543900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.848
Rank 1 · TkA02G406880 · TK1151
Endoplasmic reticulum0.092
Rank 2 · TkA02G406880 · TK1151
Cytoplasm0.060
Rank 3 · TkA02G406880 · TK1151
Nucleus0.047
Rank 4 · TkA02G406880 · TK1151
Lysosome / Vacuole0.026
Rank 5 · TkA02G406880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_238-75 aa
PF25019LRR_R13L1-DRL2168-111 aa
PF25013LRR_Zer-173-142 aa
PF23211LRR_LRWD179-158 aa
PF13855LRR_880-139 aa
PF13516LRR_680-91 aa
PF00560LRR_181-102 aa
PF24758LRR_At5g5637081-111 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G406880PF08263LRRNT_238751.9e-1454.3
TkA02G406880PF25019LRR_R13L1-DRL21681111e-0526.1
TkA02G406880PF25013LRR_Zer-1731425.9e-0730.4
TkA02G406880PF23211LRR_LRWD1791580.6310.4
TkA02G406880PF13855LRR_8801391.5e-30105.4
TkA02G406880PF13516LRR_680910.3811.6
TkA02G406880PF00560LRR_1811022.9e-44140.2
TkA02G406880PF24758LRR_At5g56370811110.002118.5
TkA02G406880PF12799LRR_4921191.1e-33115.2
TkA02G406880PF23598LRR_14922071e-29104.1
TkA02G406880PF24048LRR_NXF1-51011531.88.9
TkA02G406880PF23952LRR_EndoS1011119.87.2
TkA02G406880PF13516LRR_61021130.3811.6
TkA02G406880PF00560LRR_11041262.9e-44140.2
TkA02G406880PF25019LRR_R13L1-DRL211051591e-0526.1
TkA02G406880PF12799LRR_41271721.1e-33115.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C9H7Arabidopsis thalianasp|Q9C9H7|RLP12_ARATH Receptor-like protein 1239.500%Swiss-ProtLow
Q9SVM3Arabidopsis thalianasp|Q9SVM3|RLP49_ARATH Receptor-like protein 4932.600%Swiss-ProtLow
Q9C9H6Arabidopsis thalianasp|Q9C9H6|RLP11_ARATH Receptor-like protein 1138.800%Swiss-ProtLow
Q9SVN2Arabidopsis thalianasp|Q9SVN2|RLP47_ARATH Receptor-like protein 4731.600%Swiss-ProtLow

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