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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G365120
Reference: TK1151 Chr: Chr02 Coordinates: 92920281-92924732 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2113 bp · TkA02G365120|TK1151|cDNA

TAAATTCCTATATGCTTTTTTTCAATTTGACTTGGACACATCATCAAACGTTCCTTCTTCCTCACTTTCCTTGATCGATCATCGTTTACCGCTAGAAGAAACCCCTCTTCTCCATCATTCATCCATCAATCAATTGTCCACCATCATCACCACCGGCAACCACCATGCAACAAGGCGATTACACCTCTACAACTCCGTATTATCACAATTACCCTCAAACCCCTAACCCAAATCCCATCACCGATCTCCACCATCCTCCG...

CDS

Download CDS FASTA

1722 bp · TkA02G365120|TK1151|CDS

ATGCAACAAGGCGATTACACCTCTACAACTCCGTATTATCACAATTACCCTCAAACCCCTAACCCAAATCCCATCACCGATCTCCACCATCCTCCGGCAACTTACGCCTCCGCACCTCCCTTCACCAACACCACTACTTACCATCCTCCAACCTCCGATTTCTATTCTCCTTACCCTCAACAGCATCCCGATCCTCTCCCTCCTACTGCTCCTTCTTACGCTCCTCCCCCTCCAAACCCTAATCCGCAACCCTCAAGTTT...

Protein

Download Protein FASTA

573 aa · TkA02G365120|TK1151|PROTEIN

MQQGDYTSTTPYYHNYPQTPNPNPITDLHHPPATYASAPPFTNTTTYHPPTSDFYSPYPQQHPDPLPPTAPSYAPPPPNPNPQPSSFPQFETPHTPYQSQPPYNSPYDHHQTPPTYPSPPASSIPHNSTPLNHSSSFQYSSSLYTNPSPVPSQVPGPAYESPYETGYGGNYGRSTSDLGGGGGSADYYGKRPDVGMSRFEPSGGYGGDGYGEGVYAYQGGKAEPYGSRGTASKSSTWKEKVIFDDFGRPIGLPGKDSPSI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA02G365120
TK1151 IDTkA02G365120
OH-1004 IDLXL04_015125
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.800
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G365120
LocationChr02:92920281-92924732 (-)
DescriptionSimilar to FREE1: Protein FREE1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g20110 Endosomal sorting complex required for transport (ESCRT) component regulating multivesicular body (MVB) protein sorting and plant growth.
A unique plant ESCRT component, FREE1, regulates multivesicular body protein sorting and plant growth.2014 · DOI: 10.1016/j.cub.2014.09.014
Dual roles of an Arabidopsis ESCRT component FREE1 in regulating vacuolar protein transport and autophagic degradation.2015 · DOI: 10.1073/pnas.1421271112
FYVE1 is essential for vacuole biogenesis and intracellular trafficking in Arabidopsis.2015 · DOI: 10.1104/pp.114.253377
FYVE1/FREE1 Interacts with the PYL4 ABA Receptor and Mediates Its Delivery to the Vacuolar Degradation Pathway.2016 · DOI: 10.1105/tpc.16.00178
The effect of ABRE BINDING FACTOR 4-mediated FYVE1 on salt stress tolerance in Arabidopsis.2020 · DOI: 10.1016/j.plantsci.2020.110489

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_015125 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006897 endocytosis Biological Process
GO:0007264 small GTPase-mediated signal transduction Biological Process
GO:0009738 abscisic acid-activated signaling pathway Biological Process
GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process
GO:0015031 protein transport Biological Process
GO:0030100 regulation of endocytosis Biological Process
GO:0034058 endosomal vesicle fusion Biological Process
GO:0034498 early endosome to Golgi transport Biological Process
GO:0035973 aggrephagy Biological Process
GO:0036258 multivesicular body assembly Biological Process
GO:0042059 negative regulation of epidermal growth factor receptor signaling pathway Biological Process
GO:0060586 multicellular organismal-level iron ion homeostasis Biological Process
KEGG gene cross-reference
ath:AT1G20110
cel:CELE_R160.7
hsa:23001
mmu:216724
mmu:72145
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.482
Rank 1 · TkA02G365120 · TK1151
Cell membrane0.301
Rank 2 · TkA02G365120 · TK1151
Nucleus0.259
Rank 3 · TkA02G365120 · TK1151
Golgi apparatus0.098
Rank 4 · TkA02G365120 · TK1151
Endoplasmic reticulum0.091
Rank 5 · TkA02G365120 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08416PTB276-334 aa
PF02174IRS299-361 aa
PF01363FYVE420-483 aa
PF01485IBR424-458 aa
PF02318FYVE_2427-482 aa
PF21272FYVE_CARP1-2432-460 aa
PF22601RIM2a_ZnF444-479 aa
PF23903Phage_zn_bind_2475-482 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G365120PF08416PTB2763340.001619.2
TkA02G365120PF02174IRS2993610.005717.4
TkA02G365120PF01363FYVE4204837.9e-2071.5
TkA02G365120PF01485IBR4244581.49.7
TkA02G365120PF02318FYVE_24274826.17.8
TkA02G365120PF21272FYVE_CARP1-24324602.09.3
TkA02G365120PF22601RIM2a_ZnF4444790.6810.6
TkA02G365120PF23903Phage_zn_bind_24754820.09513.4
TkA02G365120PF02318FYVE_25095656.17.8
TkA02G365120PF23903Phage_zn_bind_25195450.09513.4
TkA02G365120PF24868YABBY_N5355660.1912.0
TkA02G365120PF21272FYVE_CARP1-25365652.09.3
TkA02G365120PF01485IBR5385681.49.7
TkA02G365120PF01363FYVE5565707.9e-2071.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ASS2Arabidopsis thalianasp|Q9ASS2|FREE1_ARATH Protein FREE156.300%Swiss-ProtHigh

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