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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA02G044820
Reference: TK1151 Chr: Chr02 Coordinates: 11571342-11573099 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1587 bp · TkA02G044820|TK1151|cDNA

ATGGCGTCTCTAATGGCGATTCGCAGAAGCACCTTCACTTCTTCCTTCAGGGTAACTTCTTTACGCTCATCTCATTCCATTTTCAACCGTGACACCCTCAGAACTCTCTCCACATCGACCGCCCCAAACAGCTTCGATTCGCCCCCAAATGATCGAACGAACTCTAACCAATGGAATCTGCAACAAAATCATCCGCAAAATTATCCACCAAATACAGGACAGCAAAATCATTACCAGGAGTACCGTAATCAGCGTCAGAA...

CDS

Download CDS FASTA

1587 bp · TkA02G044820|TK1151|CDS

ATGGCGTCTCTAATGGCGATTCGCAGAAGCACCTTCACTTCTTCCTTCAGGGTAACTTCTTTACGCTCATCTCATTCCATTTTCAACCGTGACACCCTCAGAACTCTCTCCACATCGACCGCCCCAAACAGCTTCGATTCGCCCCCAAATGATCGAACGAACTCTAACCAATGGAATCTGCAACAAAATCATCCGCAAAATTATCCACCAAATACAGGACAGCAAAATCATTACCAGGAGTACCGTAATCAGCGTCAGAA...

Protein

Download Protein FASTA

528 aa · TkA02G044820|TK1151|PROTEIN

MASLMAIRRSTFTSSFRVTSLRSSHSIFNRDTLRTLSTSTAPNSFDSPPNDRTNSNQWNLQQNHPQNYPPNTGQQNHYQEYRNQRQNYPPVTGGQNFYQENPNQRQNYPSNEARQSSYQTNTNQRPNYPPQPPIQRQNFQQHQPSNYSPPNPNPGQSKVDLLKICKEGKLKEAIELMDKGELADAECFNALFSLCGKFKKLEDAKKVHDYLLRSSYRGETQLNHKVIDMYSKCGSMIDARRVFDHMSEKAIDTWHLIITG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA02G044820
TK1151 IDTkA02G044820
OH-1004 IDLXL04_017426
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)88.400
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA02G044820
LocationChr02:11571342-11573099 (+)
DescriptionSimilar to PCMP-H66: Pentatricopeptide repeat-containing protein At2g15690, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g15690 Pentatricopeptide repeat-containing protein At2g15690, mitochondrial. No verified direct reference in this release
At2g25580 Pentatricopeptide repeat-containing protein At2g25580. No verified direct reference in this release
At4g32450 Pentatricopeptide repeat-containing protein At4g32450, mitochondrial. No verified direct reference in this release
At4g30700 Pentatricopeptide repeat-containing protein At4g30700. No verified direct reference in this release
At4g02750 Pentatricopeptide repeat-containing protein At4g02750. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_017426 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0009793 embryo development ending in seed dormancy Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT2G15690
ath:AT2G25580
ath:AT3G24000
ath:AT4G32450
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.603
Rank 1 · TkA02G044820 · TK1151
Plastid0.292
Rank 2 · TkA02G044820 · TK1151
Nucleus0.074
Rank 3 · TkA02G044820 · TK1151
Cytoplasm0.044
Rank 4 · TkA02G044820 · TK1151
Cell membrane0.012
Rank 5 · TkA02G044820 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF19964EAD11160-205 aa
PF01535PPR165-179 aa
PF13041PPR_2165-178 aa
PF12854PPR_1165-179 aa
PF23276TPR_24175-207 aa
PF13041PPR_2184-213 aa
PF01535PPR187-213 aa
PF12854PPR_1187-209 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA02G044820PF19964EAD111602050.03115.0
TkA02G044820PF01535PPR1651798.6e-1864.0
TkA02G044820PF13041PPR_21651781.2e-1661.3
TkA02G044820PF12854PPR_11651791.1e-0938.6
TkA02G044820PF23276TPR_241752075.3e-0523.9
TkA02G044820PF13041PPR_21842131.2e-1661.3
TkA02G044820PF01535PPR1872138.6e-1864.0
TkA02G044820PF12854PPR_11872091.1e-0938.6
TkA02G044820PF13812PPR_31872102.3e-0628.3
TkA02G044820PF23276TPR_242042515.3e-0523.9
TkA02G044820PF01535PPR2262498.6e-1864.0
TkA02G044820PF13041PPR_22262511.2e-1661.3
TkA02G044820PF12854PPR_12272471.1e-0938.6
TkA02G044820PF29070MSC6_N2273460.0002720.9
TkA02G044820PF13812PPR_32302512.3e-0628.3
TkA02G044820PF17177PPR_long2352532.1e-0628.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZQE5Arabidopsis thalianasp|Q9ZQE5|PP153_ARATH Pentatricopeptide repeat-containing protein At2g15690, mitochondrial56.600%Swiss-ProtHigh
Q680H3Arabidopsis thalianasp|Q680H3|PP170_ARATH Pentatricopeptide repeat-containing protein At2g2558038.200%Swiss-ProtMedium
Q9SUU7Arabidopsis thalianasp|Q9SUU7|PP346_ARATH Pentatricopeptide repeat-containing protein At4g32450, mitochondrial37.600%Swiss-ProtMedium
Q9SUH6Arabidopsis thalianasp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g3070037.100%Swiss-ProtMedium
Q9SY02Arabidopsis thalianasp|Q9SY02|PP301_ARATH Pentatricopeptide repeat-containing protein At4g0275036.300%Swiss-ProtMedium

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