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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G485230
Reference: TK1151 Chr: Chr01 Coordinates: 121455932-121458783 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2137 bp · TkA01G485230|TK1151|cDNA

AATAAAAAACACTTGCACCAGATTACGTGGGCACGTGGATTGCACGTTTTAGCAGCCGTCAGCCATATCAACCAAAGGGCAATACCGTCAAACCATACACAGTCTCCTCCATCGTTCAAAAGTCGCCGCCGTCTCCTCTGCTCCGAGCAGCCTCCTCCAGTAGCCTATCTTTTTTGCCGACTGAATCTGTTGCAACAAACCCTAGGACTGAGTTGTCGTGGTGGTGTTGCGATTTATCACTCATGGCAGGCACATCGCTT...

CDS

Download CDS FASTA

792 bp · TkA01G485230|TK1151|CDS

ATGCCTGATTATTTCCAGGGAATCAGGAGACCATGGAAAGGCGTTCTTATGTTTGGTCCACCTGGCACCGGGAAAACACTGCTGGCTAAGGCGGTTGCAACCGAATGTGGGACCACTTTTTTCAATGTTTCTTCCGCCACCTTGGCGTCCAAATGGCGGGGAGAGAGTGAACGGATGGTTAGATGTTTGTTTGATCTTGCAAGATCTTATGCACCAAGTACTATCTTCATTGATGAAATCGACTCTCTTTGTACTTCTCG...

Protein

Download Protein FASTA

263 aa · TkA01G485230|TK1151|PROTEIN

MPDYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARSYAPSTIFIDEIDSLCTSRGASGEHESSRRVKSEVLVQVDGVNNTGTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNLESRKELIKINLRTVEVAGDVDIDEVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTREEIKNMSKDDISNDPIAMCDFEEAITKVQPSVSAADIERHEKWFAEF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G485230
TK1151 IDTkA01G485230
OH-1004 IDLXL04_032111
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)95.800
Protein coverage (%)TK1151 100.000 / OH-1004 50.191
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G485230
LocationChr01:121455932-121458783 (+)
DescriptionSimilar to AAA1: Katanin p60 ATPase-containing subunit A1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g80350 Severs microtubules in vitro in an ATP-dependent manner.
BOTERO1 is required for normal orientation of cortical microtubules and anisotropic cell expansion in Arabidopsis.2001 · DOI: 10.1046/j.1365-313x.2001.00946.x
Cell specification in the Arabidopsis root epidermis requires the activity of ECTOPIC ROOT HAIR 3--a katanin-p60 protein.2002 · DOI: 10.1242/dev.129.1.123
The Arabidopsis lue1 mutant defines a katanin p60 ortholog involved in hormonal control of microtubule orientation during cell growth.2003 · DOI: 10.1242/jcs.00274
KTN80 confers precision to microtubule severing by specific targeting of katanin complexes in plant cells.2017 · DOI: 10.15252/embj.201796823

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032111 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0007283 spermatogenesis Biological Process
GO:0009653 anatomical structure morphogenesis Biological Process
GO:0009825 multidimensional cell growth Biological Process
GO:0009832 plant-type cell wall biogenesis Biological Process
GO:0010091 trichome branching Biological Process
GO:0010154 fruit development Biological Process
GO:0031122 cytoplasmic microtubule organization Biological Process
GO:0043622 cortical microtubule organization Biological Process
GO:0051013 microtubule severing Biological Process
GO:0051211 anisotropic cell growth Biological Process
GO:0051301 cell division Biological Process
KEGG gene cross-reference
ath:AT1G80350
dre:492790
gga:421626
mcf:101864950
ocu:100328900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.690
Rank 1 · TkA01G485230 · TK1151
Nucleus0.324
Rank 2 · TkA01G485230 · TK1151
Cell membrane0.070
Rank 3 · TkA01G485230 · TK1151
Peroxisome0.065
Rank 4 · TkA01G485230 · TK1151
Lysosome / Vacuole0.054
Rank 5 · TkA01G485230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13191AAA_169-45 aa
PF06068TIP4913-50 aa
PF12775AAA_713-48 aa
PF02367TsaE13-47 aa
PF05496RuvB_N14-83 aa
PF07728AAA_514-83 aa
PF06745ATPase14-30 aa
PF00158Sigma54_activat14-35 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G485230PF13191AAA_169450.003718.5
TkA01G485230PF06068TIP4913500.0007519.5
TkA01G485230PF12775AAA_713480.02914.6
TkA01G485230PF02367TsaE13470.03614.8
TkA01G485230PF05496RuvB_N14832.3e-0524.9
TkA01G485230PF07728AAA_514830.0004620.9
TkA01G485230PF06745ATPase14300.06713.3
TkA01G485230PF00158Sigma54_activat14350.1212.8
TkA01G485230PF00004AAA151521.1e-38133.3
TkA01G485230PF13671AAA_3315550.001419.6
TkA01G485230PF13173AAA_1415820.004317.8
TkA01G485230PF01078Mg_chelatase15330.004417.2
TkA01G485230PF13521AAA_2815410.005817.6
TkA01G485230PF01695IstB_IS2115800.01116.0
TkA01G485230PF00910RNA_helicase15670.01316.7
TkA01G485230PF02562PhoH15350.03214.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SEX2Arabidopsis thalianasp|Q9SEX2|KTNA1_ARATH Katanin p60 ATPase-containing subunit A189.400%Swiss-ProtHigh

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