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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G437720
Reference: TK1151 Chr: Chr01 Coordinates: 109363224-109363862 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

522 bp · TkA01G437720|TK1151|cDNA

ATGGAAAACCAGCAGAGTTTTCGTGTTTCTGCTATGGAGAAGCAGAAGAGCTTTCGAATCGCCATGGGAAGACAGATGAGCTTCGGTGTTGATAGAAGGAAACCTAAAGATTCACCAGGAAAACGTGGGGATTCCATGCTTCATCTAGCTTCTAGAGGCGGTAATCTAGCAAAAGTTATAGAAATCTTTCAAAGCGTCGGCCTCGATGGATTATCGAAACAAAATCAAGAATGGGAAACTCCGCTTTATGTTGCTGCAGA...

CDS

Download CDS FASTA

522 bp · TkA01G437720|TK1151|CDS

ATGGAAAACCAGCAGAGTTTTCGTGTTTCTGCTATGGAGAAGCAGAAGAGCTTTCGAATCGCCATGGGAAGACAGATGAGCTTCGGTGTTGATAGAAGGAAACCTAAAGATTCACCAGGAAAACGTGGGGATTCCATGCTTCATCTAGCTTCTAGAGGCGGTAATCTAGCAAAAGTTATAGAAATCTTTCAAAGCGTCGGCCTCGATGGATTATCGAAACAAAATCAAGAATGGGAAACTCCGCTTTATGTTGCTGCAGA...

Protein

Download Protein FASTA

173 aa · TkA01G437720|TK1151|PROTEIN

MENQQSFRVSAMEKQKSFRIAMGRQMSFGVDRRKPKDSPGKRGDSMLHLASRGGNLAKVIEIFQSVGLDGLSKQNQEWETPLYVAAENGHSHVVAQFLKHLDLQTASIAANNGYDPFHIAAKQGHLGNFEFVPKFGDDPVLVLMDIRVDPCLWAVGPSGSVKPVRVDPSENLA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G437720
TK1151 IDTkA01G437720
OH-1004 IDLXL04_002590
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)98.600
Protein coverage (%)TK1151 41.618 / OH-1004 64.865
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G437720
LocationChr01:109363224-109363862 (-)
DescriptionSimilar to At5g02620: Ankyrin repeat-containing protein At5g02620
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g02620 Ankyrin repeat-containing protein At5g02620. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002590 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002027 regulation of heart rate Biological Process
GO:0006874 intracellular calcium ion homeostasis Biological Process
GO:0006897 endocytosis Biological Process
GO:0008104 intracellular protein localization Biological Process
GO:0009651 response to salt stress Biological Process
GO:0010628 positive regulation of gene expression Biological Process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion Biological Process
GO:0010882 regulation of cardiac muscle contraction by calcium ion signaling Biological Process
GO:0015031 protein transport Biological Process
GO:0031647 regulation of protein stability Biological Process
GO:0034394 protein localization to cell surface Biological Process
GO:0036309 protein localization to M-band Biological Process
KEGG gene cross-reference
ath:AT3G12360
ath:AT5G02620
dosa:Os01g0837000
hsa:287
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.423
Rank 1 · TkA01G437720 · TK1151
Nucleus0.381
Rank 2 · TkA01G437720 · TK1151
Cell membrane0.160
Rank 3 · TkA01G437720 · TK1151
Endoplasmic reticulum0.084
Rank 4 · TkA01G437720 · TK1151
Mitochondrion0.083
Rank 5 · TkA01G437720 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12796Ank_241-57 aa
PF13857Ank_541-57 aa
PF13637Ank_441-56 aa
PF00023Ank43-57 aa
PF13606Ank_343-62 aa
PF12796Ank_247-130 aa
PF24521Ank_KRIT147-120 aa
PF13637Ank_471-94 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G437720PF12796Ank_241575e-1040.5
TkA01G437720PF13857Ank_541573.6e-0834.3
TkA01G437720PF13637Ank_441565.1e-0730.5
TkA01G437720PF00023Ank43573.6e-0833.9
TkA01G437720PF13606Ank_343624.5e-0833.4
TkA01G437720PF12796Ank_2471305e-1040.5
TkA01G437720PF24521Ank_KRIT1471200.06613.6
TkA01G437720PF13637Ank_471945.1e-0730.5
TkA01G437720PF13857Ank_574953.6e-0834.3
TkA01G437720PF00023Ank79993.6e-0833.9
TkA01G437720PF13606Ank_3791004.5e-0833.4
TkA01G437720PF13857Ank_51111313.6e-0834.3
TkA01G437720PF13637Ank_41111265.1e-0730.5
TkA01G437720PF00023Ank1121263.6e-0833.9
TkA01G437720PF13606Ank_31121264.5e-0833.4
TkA01G437720PF24521Ank_KRIT11151310.06613.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q6AWW5Arabidopsis thalianasp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g0262043.200%Swiss-ProtMedium

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