LXL04_035827 | RubberDandelionOmics

Gene overview

LXL04_035827

Reference: OH-1004 Chr: Chr08 Coordinates: 29889976-29902634 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7110 bp · LXL04_035827|LXL04_035827|OH1004|cDNA

ATGCATTTGAGAACCGAAGAAGCAATCACAAACATCGCCTTTTTCGCCTTTTTCTCGATAGATGGGGTGGGGTGGGTTAAATCCTCTATACCCACCTTTAACTCTATTATAGATTGCTTTGCTTGGATTGATATAACCTTCCAGGTCCCGTCCAAAATAAAAACTGTCAAGGCGATAGTGGTGACTCTCAAGGCGATAGTGGTGACTCTCTTTAAGTCTATTTGGATTCACAAAAATGACATCATCTTCAACAACAATAG...

CDS

Download CDS FASTA

7110 bp · LXL04_035827|LXL04_035827|OH1004|CDS

ATGCATTTGAGAACCGAAGAAGCAATCACAAACATCGCCTTTTTCGCCTTTTTCTCGATAGATGGGGTGGGGTGGGTTAAATCCTCTATACCCACCTTTAACTCTATTATAGATTGCTTTGCTTGGATTGATATAACCTTCCAGGTCCCGTCCAAAATAAAAACTGTCAAGGCGATAGTGGTGACTCTCAAGGCGATAGTGGTGACTCTCTTTAAGTCTATTTGGATTCACAAAAATGACATCATCTTCAACAACAATAG...

Protein

Download Protein FASTA

2369 aa · LXL04_035827|LXL04_035827|OH1004|PROTEIN

MHLRTEEAITNIAFFAFFSIDGVGWVKSSIPTFNSIIDCFAWIDITFQVPSKIKTVKAIVVTLKAIVVTLFKSIWIHKNDIIFNNNRVNKEICLKRMQKFSFFWLYNRSSLNIMGLNTWMSNPFCGGNMSEAQRLTVNGSFNYSNGYTNGAISLRSPATRSAIDEFCNALNGKNPIHSILIANNGMAAVKFIRSVRTWSYETFGSEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLIVETAEITHV...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_035827`
TK1151 ID	TkA04G104970
OH-1004 ID	LXL04_035827
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.100
Protein coverage (%)	TK1151 90.525 / OH-1004 22.626 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_035827

Location Chr08:29889976-29902634 (+)

Description Similar to ACC1: Acetyl-CoA carboxylase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g36160`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	Multifunctional acetyl-CoA carboxylase 1 is essential for very long chain fatty acid elongation and embryo development in Arabidopsis.2003 · DOI: 10.1046/j.1365-313x.2003.016010.x gurke and pasticcino3 mutants affected in embryo development are impaired in acetyl-CoA carboxylase.2004 · DOI: 10.1038/sj.embor.7400124 The GURKE gene encoding an acetyl-CoA carboxylase is required for partitioning the embryo apex into three subregions in Arabidopsis.2004 · DOI: 10.1093/pcp/pch148 Targeting of the Arabidopsis homomeric acetyl-coenzyme A carboxylase to plastids of rapeseeds.1997 · DOI: 10.1104/pp.113.1.75 The PASTICCINO genes of Arabidopsis thaliana are involved in the control of cell division and differentiation.1998 · DOI: 10.1242/dev.125.5.909
`At1g36180`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0363300`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	No verified direct reference in this release
`Os05g0295300`	Multifunctional enzyme that catalyzes the carboxylation of acetyl-CoA, forming malonyl-CoA, which is used in the plastid for fatty acid synthesis and in the cytosol in various biosynthetic pathways including fatty acid elongation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035827 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006633 fatty acid biosynthetic process Biological Process

GO:0009735 response to cytokinin Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0009933 meristem structural organization Biological Process

GO:0010072 primary shoot apical meristem specification Biological Process

GO:0030497 fatty acid elongation Biological Process

GO:0048364 root development Biological Process

GO:0048367 shoot system development Biological Process

GO:0101026 mitotic nuclear membrane biogenesis Biological Process

GO:2001295 malonyl-CoA biosynthetic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

KEGG gene cross-reference

ath:AT1G36160

ath:AT1G36180

dosa:Os05g0295300

dosa:Os10g0363300

osa:4348450

spo:2543344

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.343

Rank 1 · LXL04_035827 · OH-1004

Mitochondrion0.267

Rank 2 · LXL04_035827 · OH-1004

Plastid0.143

Rank 3 · LXL04_035827 · OH-1004

Nucleus0.139

Rank 4 · LXL04_035827 · OH-1004

Peroxisome0.127

Rank 5 · LXL04_035827 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00289.29Biotin_carb_N176-295 aa

PF02786.23CPSase_L_D2343-525 aa

PF02222.28ATP-grasp344-495 aa

PF02655.20ATP-grasp_3350-497 aa

PF02785.26Biotin_carb_C572-678 aa

PF21385.3ACCA_BT694-809 aa

PF00364.29Biotin_lipoyl819-882 aa

PF08326.18ACC_central883-1610 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_035827	`PF00289.29`	Biotin_carb_N	176	295	3.4e-29	102.2
LXL04_035827	`PF02786.23`	CPSase_L_D2	343	525	3.3e-46	158.2
LXL04_035827	`PF02222.28`	ATP-grasp	344	495	7.9e-08	32.9
LXL04_035827	`PF02655.20`	ATP-grasp_3	350	497	4.4e-08	34.1
LXL04_035827	`PF02785.26`	Biotin_carb_C	572	678	2.8e-24	86.0
LXL04_035827	`PF21385.3`	ACCA_BT	694	809	9e-29	100.5
LXL04_035827	`PF00364.29`	Biotin_lipoyl	819	882	1.9e-11	44.4
LXL04_035827	`PF08326.18`	ACC_central	883	1610	2.7e-168	562.2
LXL04_035827	`PF01039.28`	Carboxyl_trans	1712	2256	1.6e-153	512.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q38970`	Arabidopsis thaliana	Acetyl-CoA carboxylase 1	78.597%	Swiss-Prot	strong database homology
`F4I1L3`	Arabidopsis thaliana	Acetyl-CoA carboxylase 2	73.722%	Swiss-Prot	strong database homology
`Q8S6N5`	Oryza sativa subsp. japonica	Acetyl-CoA carboxylase 1	72.063%	Swiss-Prot	strong database homology
`B9FK36`	Oryza sativa subsp. japonica	Acetyl-CoA carboxylase 2	68.461%	Swiss-Prot	strong database homology

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