LXL04_021138 | RubberDandelionOmics

Gene overview

LXL04_021138

Reference: OH-1004 Chr: Chr04 Coordinates: 122217068-122218345 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

846 bp · LXL04_021138|LXL04_021138|OH1004|cDNA

ATGTTTGGGTTCAGAAGACAGGCTCCACCTCCTGCCAAACCCGCAGAACCAGAAGCCGATAAGAAAGAAGCCGATAAAAAAGACGCAACTAAAAAAGACGCACCTGCTAAAAAGACATCAGAAGCAGCACACCATGATAAAAAAAGCAACCCCATTAACGACGACGACGACGACGATGATTTCTTCGGAAAAGGGAAAACACAAATCAAGAAAAAAAGTAAAGCTGAGCTGGACAACATGTCGAATCAGGAGTTAGAGCA...

CDS

Download CDS FASTA

846 bp · LXL04_021138|LXL04_021138|OH1004|CDS

ATGTTTGGGTTCAGAAGACAGGCTCCACCTCCTGCCAAACCCGCAGAACCAGAAGCCGATAAGAAAGAAGCCGATAAAAAAGACGCAACTAAAAAAGACGCACCTGCTAAAAAGACATCAGAAGCAGCACACCATGATAAAAAAAGCAACCCCATTAACGACGACGACGACGACGATGATTTCTTCGGAAAAGGGAAAACACAAATCAAGAAAAAAAGTAAAGCTGAGCTGGACAACATGTCGAATCAGGAGTTAGAGCA...

Protein

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281 aa · LXL04_021138|LXL04_021138|OH1004|PROTEIN

MFGFRRQAPPPAKPAEPEADKKEADKKDATKKDAPAKKTSEAAHHDKKSNPINDDDDDDDFFGKGKTQIKKKSKAELDNMSNQELEHYAVDQAQDTTKSVNNALKIAEDIKSDAGKTLDTLHAQGEQIHRTHEKAADMEKDLSRGEKILGSLGGMFSMTWKPKKGKEVKGPEPLDNKADKKASKEQREKLLEKDKKGKKDNKKGHAEPKNAMQKVEAEKEKQDEALDDLSDILGDLKGMATEMGSELDRQNKALDDLSDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_021138`
TK1151 ID	TkA05G355790
OH-1004 ID	LXL04_021138
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_021138

Location Chr04:122217068-122218345 (-)

Description Similar to SNAP30: Putative SNAP25 homologous protein SNAP30

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g13890`	Vesicle trafficking protein that functions in the secretory pathway.	No verified direct reference in this release
`At5g61210`	t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation.	No verified direct reference in this release
`At5g07880`	SNAREs, soluble N-ethylmaleimide-sensitive factor-attachment protein receptors, are essential proteins for fusion of cellular membranes.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0437200`	t-SNARE involved in diverse vesicle trafficking and membrane fusion processes (Probable).	OsSYP121 Accumulates at Fungal Penetration Sites and Mediates Host Resistance to Rice Blast.2019 · DOI: 10.1104/pp.18.01013

Functional annotation source

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Functional annotation source: OH1004 · LXL04_021138 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0000911 cytokinesis by cell plate formation Biological Process

GO:0006887 exocytosis Biological Process

GO:0006906 vesicle fusion Biological Process

GO:0006952 defense response Biological Process

GO:0009612 response to mechanical stimulus Biological Process

GO:0015031 protein transport Biological Process

GO:0016192 vesicle-mediated transport Biological Process

GO:0016197 endosomal transport Biological Process

GO:0031340 positive regulation of vesicle fusion Biological Process

GO:0035493 SNARE complex assembly Biological Process

GO:0046887 positive regulation of hormone secretion Biological Process

GO:0051707 response to other organism Biological Process

KEGG gene cross-reference

ath:AT1G13890

ath:AT5G07880

ath:AT5G61210

dosa:Os02g0437200

osa:4329226

rno:25012

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.519

Rank 1 · LXL04_021138 · OH-1004

Cytoplasm0.433

Rank 2 · LXL04_021138 · OH-1004

Nucleus0.174

Rank 3 · LXL04_021138 · OH-1004

Extracellular0.044

Rank 4 · LXL04_021138 · OH-1004

Golgi apparatus0.044

Rank 5 · LXL04_021138 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12352.14V-SNARE_C94-151 aa

PF05739.27SNARE218-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_021138	`PF12352.14`	V-SNARE_C	94	151	7.8e-06	26.8
LXL04_021138	`PF05739.27`	SNARE	218	278	3e-12	46.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LMG8`	Arabidopsis thaliana	Putative SNAP25 homologous protein SNAP30	58.190%	Swiss-Prot	strong database homology
`Q9S7P9`	Arabidopsis thaliana	SNAP25 homologous protein SNAP33	56.250%	Swiss-Prot	strong database homology
`Q9SD96`	Arabidopsis thaliana	SNAP25 homologous protein SNAP29	50.725%	Swiss-Prot	strong database homology
`Q0E1I7`	Oryza sativa subsp. japonica	SNAP25 homologous protein SNAP32	51.724%	Swiss-Prot	strong database homology

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