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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G355790
Reference: TK1151 Chr: Chr05 Coordinates: 88194529-88196558 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1175 bp · TkA05G355790|TK1151|cDNA

TATCTCTCGATTAATTTATACATTTGGAGAGAAGACACTTTCACCGTTTTCTCTCCCTCCACCATTAGAATAAAGAAAAATAAATTTGTTCGGCCGGAGGGTAATTCTTACTCATTTATGTACATTGCTCCAAATTTCAGATTAAGGTATCATTGCCGAACAATCTAGGTTTTAGTATAGGTATAATCTAATCTTCAAACATGTTTGGGTTCAGAAGACAGGCTCCACCTCCTGCCAAACCCGCAGAACCAGAAGCCGAT...

CDS

Download CDS FASTA

846 bp · TkA05G355790|TK1151|CDS

ATGTTTGGGTTCAGAAGACAGGCTCCACCTCCTGCCAAACCCGCAGAACCAGAAGCCGATAAGAAAGAAGCCGATAAAAAAGATGCAACTAAAAAAGACGCACCTGCTAAAAAGACATCGGAAGCAGCACACCATGATAAAAAAAGCAACCCCATTAACGACGACGACGACGACGATGACTTCTTCGGAAAAGGGAAAACACAAATCAAGAAAAAAAGTAAAGCTGAGCTGGACAACATGTCCAATCAGGAGTTAGAGCA...

Protein

Download Protein FASTA

281 aa · TkA05G355790|TK1151|PROTEIN

MFGFRRQAPPPAKPAEPEADKKEADKKDATKKDAPAKKTSEAAHHDKKSNPINDDDDDDDFFGKGKTQIKKKSKAELDNMSNQELEHYAVDQAQDTTKSVNNALKIAEDIKSDAGKTLDTLHAQGEQIHRTHEKAADMEKDLSRGEKILGSLGGMFSMTWKPKKGKEVKGPEPLDNKADKKASKEQREKLLEKDKKGKKDNKKGHAEPKNAMQKVEAEKEKQDEALDDLSDILGDLKGMATEMGSELDRQNKALDDLSDD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G355790
TK1151 IDTkA05G355790
OH-1004 IDLXL04_021138
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G355790
LocationChr05:88194529-88196558 (-)
DescriptionSimilar to SNAP30: Putative SNAP25 homologous protein SNAP30
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g13890 Vesicle trafficking protein that functions in the secretory pathway. No verified direct reference in this release
At5g61210 t-SNARE involved in diverse vesicle trafficking and membrane fusion processes, including cell plate formation. No verified direct reference in this release
At5g07880 SNAREs, soluble N-ethylmaleimide-sensitive factor-attachment protein receptors, are essential proteins for fusion of cellular membranes. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0437200 t-SNARE involved in diverse vesicle trafficking and membrane fusion processes (Probable).
OsSYP121 Accumulates at Fungal Penetration Sites and Mediates Host Resistance to Rice Blast.2019 · DOI: 10.1104/pp.18.01013
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_021138 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000911 cytokinesis by cell plate formation Biological Process
GO:0006887 exocytosis Biological Process
GO:0006906 vesicle fusion Biological Process
GO:0006952 defense response Biological Process
GO:0009612 response to mechanical stimulus Biological Process
GO:0015031 protein transport Biological Process
GO:0016192 vesicle-mediated transport Biological Process
GO:0016197 endosomal transport Biological Process
GO:0031340 positive regulation of vesicle fusion Biological Process
GO:0035493 SNARE complex assembly Biological Process
GO:0046887 positive regulation of hormone secretion Biological Process
GO:0051707 response to other organism Biological Process
KEGG gene cross-reference
ath:AT1G13890
ath:AT5G07880
ath:AT5G61210
dosa:Os02g0437200
osa:4329226
rno:25012
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.519
Rank 1 · TkA05G355790 · TK1151
Cytoplasm0.433
Rank 2 · TkA05G355790 · TK1151
Nucleus0.174
Rank 3 · TkA05G355790 · TK1151
Extracellular0.044
Rank 4 · TkA05G355790 · TK1151
Golgi apparatus0.044
Rank 5 · TkA05G355790 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12333Ipi1_N30-44 aa
PF30583DUF864971-159 aa
PF03908Sec2072-109 aa
PF09228Prok-TraM73-138 aa
PF05739SNARE88-116 aa
PF23921DUF726089-133 aa
PF03908Sec2093-152 aa
PF06103DUF94893-139 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G355790PF12333Ipi1_N30440.7211.1
TkA05G355790PF30583DUF8649711590.4510.8
TkA05G355790PF03908Sec20721090.05714.1
TkA05G355790PF09228Prok-TraM731380.2312.8
TkA05G355790PF05739SNARE881163e-1246.9
TkA05G355790PF23921DUF7260891335.27.2
TkA05G355790PF03908Sec20931520.05714.1
TkA05G355790PF06103DUF948931390.6710.9
TkA05G355790PF07889DUF1664931300.7810.5
TkA05G355790PF12352V-SNARE_C941517.8e-0626.8
TkA05G355790PF14712Snapin_Pallidin1061490.4711.7
TkA05G355790PF12333Ipi1_N1061910.7211.1
TkA05G355790PF05531NPV_P101061280.8310.9
TkA05G355790PF05377FlaC_arch1161340.2712.4
TkA05G355790PF05739SNARE1211493e-1246.9
TkA05G355790PF09228Prok-TraM1872340.2312.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LMG8Arabidopsis thalianasp|Q9LMG8|SNP30_ARATH Putative SNAP25 homologous protein SNAP3046.100%Swiss-ProtMedium
Q9S7P9Arabidopsis thalianasp|Q9S7P9|SNP33_ARATH SNAP25 homologous protein SNAP3341.800%Swiss-ProtMedium
Q9SD96Arabidopsis thalianasp|Q9SD96|SNP29_ARATH SNAP25 homologous protein SNAP2938.700%Swiss-ProtMedium
Q0E1I7Oryza sativa subsp. japonicasp|Q0E1I7|SNP32_ORYSJ SNAP25 homologous protein SNAP3238.200%Swiss-ProtMedium

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