LXL04_016102 | RubberDandelionOmics

Gene overview

LXL04_016102

Reference: OH-1004 Chr: Chr03 Coordinates: 110317423-110319399 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1398 bp · LXL04_016102|LXL04_016102|OH1004|cDNA

ATGGGTGCTTGTTATTCAACAACAGGCGGCGCCCGGAGAGATAAACACGAtaaaggtgatgaagatgaaggATGGTGGAAGTCCAAGCGTGGTAGTGAGATCAATCGTACATCCACCTTCGTGCTCGGCGGCAGTGTGGAGGAGCGACTGCTCCACAATATTCCTGGTAGGCTTTTCGGTAATGGCTCCTGCAATATCGCTAGTTTACATACGCAACAAGGCAAGAAAGGGACCAATCAAGATGCCATGATCGTTTGGGA...

CDS

Download CDS FASTA

1398 bp · LXL04_016102|LXL04_016102|OH1004|CDS

ATGGGTGCTTGTTATTCAACAACAGGCGGCGCCCGGAGAGATAAACACGATAAAGGTGATGAAGATGAAGGATGGTGGAAGTCCAAGCGTGGTAGTGAGATCAATCGTACATCCACCTTCGTGCTCGGCGGCAGTGTGGAGGAGCGACTGCTCCACAATATTCCTGGTAGGCTTTTCGGTAATGGCTCCTGCAATATCGCTAGTTTACATACGCAACAAGGCAAGAAAGGGACCAATCAAGATGCCATGATCGTTTGGGA...

Protein

Download Protein FASTA

465 aa · LXL04_016102|LXL04_016102|OH1004|PROTEIN

MGACYSTTGGARRDKHDKGDEDEGWWKSKRGSEINRTSTFVLGGSVEERLLHNIPGRLFGNGSCNIASLHTQQGKKGTNQDAMIVWEKFNSSSDATFCGVFDGHGPYGHMVAKKVRDSLPVLLSTKWMDTTNTHHISDNSNTNESIPEEELFEEYWCEQSDDEEKETIPEKYSPLKKCLLKSFKLIDKELKNHPPLTVSAVDQLLKYIIFQGQDLVIGNLGDSRAVLGTRDEHNSLVPVQLTVDLKPNLPREAARIQQFK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_016102`
TK1151 ID	TkA02G192610
OH-1004 ID	LXL04_016102
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	95.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_016102

Location Chr03:110317423-110319399 (+)

Description Similar to At1g16220: Probable protein phosphatase 2C 6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g16220`	Probable protein phosphatase 2C 6.	No verified direct reference in this release
`At1g79630`	Probable protein phosphatase 2C 18.	No verified direct reference in this release
`At3g02750`	Probable protein phosphatase 2C 33.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0500300`	Probable protein phosphatase 2C 66.	No verified direct reference in this release
`Os11g0417400`	Probable protein phosphatase 2C 75.	No verified direct reference in this release

Functional annotation source

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Functional annotation source: OH1004 · LXL04_016102 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:1902531 regulation of intracellular signal transduction Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004722 protein serine/threonine phosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G16220

ath:AT1G79630

ath:AT3G02750

dosa:Os08g0500300

dosa:Os11g0417400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.410

Rank 1 · LXL04_016102 · OH-1004

Nucleus0.333

Rank 2 · LXL04_016102 · OH-1004

Cell membrane0.204

Rank 3 · LXL04_016102 · OH-1004

Endoplasmic reticulum0.097

Rank 4 · LXL04_016102 · OH-1004

Golgi apparatus0.089

Rank 5 · LXL04_016102 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00481.27PP2C72-356 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_016102	`PF00481.27`	PP2C	72	356	3.9e-36	125.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SA22`	Arabidopsis thaliana	Probable protein phosphatase 2C 6	54.158%	Swiss-Prot	strong database homology
`Q8RXZ4`	Arabidopsis thaliana	Probable protein phosphatase 2C 18	53.438%	Swiss-Prot	strong database homology
`Q9M8R7`	Arabidopsis thaliana	Probable protein phosphatase 2C 33	51.126%	Swiss-Prot	strong database homology
`Q6ZKL8`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 66	56.803%	Swiss-Prot	strong database homology
`Q2R637`	Oryza sativa subsp. japonica	Probable protein phosphatase 2C 75	49.261%	Swiss-Prot	moderate database homology

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