LXL04_000894 | RubberDandelionOmics

Gene overview

LXL04_000894

Reference: OH-1004 Chr: Chr01 Coordinates: 16393605-16396750 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3054 bp · LXL04_000894|LXL04_000894|OH1004|cDNA

ATGTCGAAACCCCATTTTcggttcttcttctttttgttgTTTTGCTTTTCGTCGGTGTTTTCAAAGGTGGTGGAGGAGAACGATCAAGCTTCGATTCTGTTAAAAATCAAATCCCACCTCATTGATCCTCTCGATCAGCTAAAAGATTGGAAGATCTCTGAAAACCACGCCGCGCATTGTAATTGGACCGGAATTGAGTGTAATTCCGTCGGAAGAATCCAGAAGCTTGACCTTTCACGTCGGAATCTGAGTGGGGTGGT...

CDS

Download CDS FASTA

3054 bp · LXL04_000894|LXL04_000894|OH1004|CDS

ATGTCGAAACCCCATTTTCGGTTCTTCTTCTTTTTGTTGTTTTGCTTTTCGTCGGTGTTTTCAAAGGTGGTGGAGGAGAACGATCAAGCTTCGATTCTGTTAAAAATCAAATCCCACCTCATTGATCCTCTCGATCAGCTAAAAGATTGGAAGATCTCTGAAAACCACGCCGCGCATTGTAATTGGACCGGAATTGAGTGTAATTCCGTCGGAAGAATCCAGAAGCTTGACCTTTCACGTCGGAATCTGAGTGGGGTGGT...

Protein

Download Protein FASTA

1017 aa · LXL04_000894|LXL04_000894|OH1004|PROTEIN

MSKPHFRFFFFLLFCFSSVFSKVVEENDQASILLKIKSHLIDPLDQLKDWKISENHAAHCNWTGIECNSVGRIQKLDLSRRNLSGVVSDDIQLLRSLTSINLCCNGFSSALPKLLSNLTLLESVDLSQNYFIDSFPKGLGMAIGLTLLNASSNNFSGDIPDFGNNTRMETLDLRGNFFIGSIPESFMNLKKLKFLGLSGNNLTGSIPKGIGELSSLESIVIGYNEFTGGIPAEFGNLTNLKYLDLAYGNLGGSIPPQLGN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_000894`
TK1151 ID	TkA01G578270
OH-1004 ID	LXL04_000894
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	99.800
Protein coverage (%)	TK1151 90.638 / OH-1004 41.888 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_000894

Location Chr01:16393605-16396750 (+)

Description Similar to MIK1: MDIS1-interacting receptor like kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g28650`	Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.	A receptor heteromer mediates the male perception of female attractants in plants.2016 · DOI: 10.1038/nature16975
`At1g08590`	Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.	No verified direct reference in this release
`At5g61480`	Acts with CLE41p and CLE44p peptides as a ligand-receptor pair in a signal transduction pathway involved in the regulation of procambium maintenance and polarity during vascular-tissue development.	No verified direct reference in this release
`At3g49670`	LRR-rich receptor-like kinase (LRR-RLK) implicated in the detection of the CLAVATA-family peptides (CLEs), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and, probably, of PBL34, PBL35 and PBL36.	No verified direct reference in this release
`At5g65700`	LRR-rich receptor-like kinase (LRR-RLK) that, similarly to CLV1 and BAM3, participates in the detection of the CLAVATA-family peptides (e.g. CLE25, CLE26 and CLE45), and to the regulation of the triggered signaling required for protophloem differentiation and meristems maintenance through the phosphorylation of CIK proteins (CIKs) and of PBL34, PBL35 and PBL36.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000894 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009755 hormone-mediated signaling pathway Biological Process

GO:0009934 regulation of meristem structural organization Biological Process

GO:0010067 procambium histogenesis Biological Process

GO:0010075 regulation of meristem growth Biological Process

GO:0010087 phloem or xylem histogenesis Biological Process

GO:0010089 xylem development Biological Process

GO:0010183 pollen tube guidance Biological Process

GO:0010223 secondary shoot formation Biological Process

GO:0030154 cell differentiation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046777 protein autophosphorylation Biological Process

KEGG gene cross-reference

ath:AT1G08590

ath:AT3G49670

ath:AT4G28650

ath:AT5G61480

ath:AT5G65700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.879

Rank 1 · LXL04_000894 · OH-1004

Endoplasmic reticulum0.082

Rank 2 · LXL04_000894 · OH-1004

Cytoplasm0.058

Rank 3 · LXL04_000894 · OH-1004

Nucleus0.037

Rank 4 · LXL04_000894 · OH-1004

Lysosome / Vacuole0.026

Rank 5 · LXL04_000894 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263.18LRRNT_227-68 aa

PF13855.13LRR_8145-202 aa

PF12799.14LRR_4145-183 aa

PF23598.2LRR_14168-267 aa

PF23598.2LRR_14233-318 aa

PF23598.2LRR_14257-361 aa

PF13855.13LRR_8407-466 aa

PF13855.13LRR_8478-538 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_000894	`PF08263.18`	LRRNT_2	27	68	4.8e-10	40.3
LXL04_000894	`PF13855.13`	LRR_8	145	202	2.4e-41	140.0
LXL04_000894	`PF12799.14`	LRR_4	145	183	1.9e-36	124.0
LXL04_000894	`PF23598.2`	LRR_14	168	267	1.5e-28	100.3
LXL04_000894	`PF23598.2`	LRR_14	233	318	1.5e-28	100.3
LXL04_000894	`PF23598.2`	LRR_14	257	361	1.5e-28	100.3
LXL04_000894	`PF13855.13`	LRR_8	407	466	2.4e-41	140.0
LXL04_000894	`PF13855.13`	LRR_8	478	538	2.4e-41	140.0
LXL04_000894	`PF12799.14`	LRR_4	502	539	1.9e-36	124.0
LXL04_000894	`PF13855.13`	LRR_8	527	586	2.4e-41	140.0
LXL04_000894	`PF12799.14`	LRR_4	552	586	1.9e-36	124.0
LXL04_000894	`PF00069.32`	Pkinase	705	975	2.6e-49	168.7
LXL04_000894	`PF07714.24`	PK_Tyr_Ser-Thr	705	933	1.4e-43	149.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9M0G7`	Arabidopsis thaliana	MDIS1-interacting receptor like kinase 1	66.010%	Swiss-Prot	strong database homology
`Q9FRS6`	Arabidopsis thaliana	Leucine-rich repeat receptor-like protein kinase PXL1	58.221%	Swiss-Prot	strong database homology
`Q9FII5`	Arabidopsis thaliana	Leucine-rich repeat receptor-like protein kinase TDR	45.361%	Swiss-Prot	moderate database homology
`Q9M2Z1`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2	42.963%	Swiss-Prot	moderate database homology
`O49545`	Arabidopsis thaliana	Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1	42.248%	Swiss-Prot	moderate database homology

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