Homologous Recombination Primer Design
Detect common restriction sites in-browser and generate homology-arm PCR primers from vector and insert sequences.
Open tool Load real vector and insert sequencesTools Hub
Choose an internal tool by task. Sequence-design tools include real sequence inputs and runnable gene examples.
Sequence and experimental design
CRISPR Editing Target Design
Rapidly rank SpCas9 NGG targets from Gene ID, CDS, cDNA, or DNA sequence using disclosed sequence rules; no vector-specific primers are generated.
Open tool Run real example · TkA01G000070qRT-PCR Primer Design
Design qRT-PCR primers from Gene ID, cDNA, or CDS and flag homologous-CDS 3-prime seed risk.
Open tool Run real example · TkA01G000070BLAST
Supports 15 bp primer-level, CDS, protein, and gDNA BLAST against OH-1004 or TK1151.
Open toolJBrowse Genome Browser
Browse genome structure, gene models, and the current gene context visually.
Open toolData queries and comparisons
Gene Card
Query gene identity, sequences, and annotations by gene ID or keyword.
Open toolID Crosswalk
Inspect gene-level matches and mapping categories across references.
Open toolTranscriptome Expression
Select a dataset, then inspect expression across tissues or conditions with sample values and plots.
Open tool View tissue expression exampleProteome Evidence
Choose the dataset first, then inspect gene-level protein abundance, sample intensities, and version bridges.
Open toolGene Variants
Query PASS SNPs/Indels by gene across both CRA009020 references and view carrier samples among 129 samples; results are computational candidates.
Open toolOrthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Open toolDownloads / Citation
Access public downloads, source notes, and citation information.
Open toolFunction and network analysis
Gene Annotation
Query multidimensional annotations including Swiss-Prot, GO, KEGG, and functional descriptions.
Open toolGO/KEGG Annotation
Summarize taxon-screened GO annotations and KEGG gene cross-references; enrichment significance testing is not yet available.
Open toolProtein Domain / Pfam
View protein domains, hit intervals, and confidence evidence.
Open toolSubcellular Localization
Query species-native protein localization predictions and supplementary homology evidence.
Open toolTF Binding Site Prediction
Predict motif-supported candidate binding sites from 4000 bp upstream regions or submitted DNA sequences.
Open toolTF Targets
Query candidate target genes and regulatory-network clues from a TF or family.
Open toolProtein Association Network
Visualize gene-centered candidate protein associations with evidence rows and scoped downloads; these are not validated physical interactions.
Open tool Run network exampleCoexpression
Query candidate partners in available OH-1004 datasets; TKU uniform-model coexpression is not yet available.
Open toolRubber / Terpenoid / Isoprenoid Metabolism
Explore rubber-biosynthesis pathways and candidate genes.
Open tool