Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00238
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 23
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00238The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00238 |
Chr05:56071595-64284010 | Chr04:87352986-96101164 | mixed | 23 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 23 · Showing 1–23 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA05G224020 | LXL04_020526 | JCVI_TKOH_00238 | 78.3 | 43.271 / 37.594 | Complex |
TkA05G224210 | LXL04_020530 | JCVI_TKOH_00238 | 100.0 | 100.0 / 100.0 | Strict |
TkA05G224410 | LXL04_020529 | JCVI_TKOH_00238 | 95.7 | 76.86 / 39.574 | Complex |
TkA05G224460 | LXL04_020532 | JCVI_TKOH_00238 | 92.0 | 65.672 / 57.534 | Review |
TkA05G231490 | LXL04_020560 | JCVI_TKOH_00238 | 99.4 | 100.0 / 100.0 | Strict |
TkA05G233210 | LXL04_020580 | JCVI_TKOH_00238 | 94.3 | 79.104 / 88.827 | Complex |
TkA05G237810 | LXL04_020575 | JCVI_TKOH_00238 | 97.8 | 100.0 / 54.192 | Review |
TkA05G242560 | LXL04_020584 | JCVI_TKOH_00238 | 99.9 | 100.0 / 100.0 | Strict |
TkA05G243410 | LXL04_020586 | JCVI_TKOH_00238 | 97.8 | 100.0 / 100.0 | Strict |
TkA05G245020 | LXL04_020590 | JCVI_TKOH_00238 | 88.3 | 95.294 / 42.95 | Review |
TkA05G245100 | LXL04_020591 | JCVI_TKOH_00238 | 98.8 | 100.0 / 100.0 | Review |
TkA05G248040 | LXL04_020602 | JCVI_TKOH_00238 | 94.9 | 91.892 / 73.333 | Complex |
TkA05G248950 | LXL04_020604 | JCVI_TKOH_00238 | 100.0 | 100.0 / 100.0 | Strict |
TkA05G251050 | LXL04_020602 | JCVI_TKOH_00238 | 94.9 | 91.892 / 73.333 | Complex |
TkA05G251490 | LXL04_020600 | JCVI_TKOH_00238 | 100.0 | 95.161 / 39.509 | Review |
TkA05G251510 | LXL04_020599 | JCVI_TKOH_00238 | 100.0 | 95.652 / 50.993 | Review |
TkA05G251590 | LXL04_020598 | JCVI_TKOH_00238 | 100.0 | 100.0 / 63.522 | Review |
TkA05G252240 | LXL04_020596 | JCVI_TKOH_00238 | 96.7 | 99.282 / 88.902 | Strict |
TkA05G253920 | LXL04_020612 | JCVI_TKOH_00238 | 97.5 | 97.59 / 100.0 | Review |
TkA05G255520 | LXL04_020614 | JCVI_TKOH_00238 | 78.1 | 95.88 / 67.588 | Complex |
TkA05G257560 | LXL04_020610 | JCVI_TKOH_00238 | 99.7 | 100.0 / 100.0 | Strict |
TkA05G258010 | LXL04_020619 | JCVI_TKOH_00238 | 91.5 | 100.0 / 88.05 | Complex |
TkA05G259290 | LXL04_020622 | JCVI_TKOH_00238 | 99.2 | 100.0 / 100.0 | Review |