Orthology / Synteny Evidence
Inspect cross-reference orthology and synteny-block evidence.
Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.
Global Block Summary
Synteny blocks
427
ID converter records
84884
High confidence
302
Medium confidence
125
| Material | Assembly | Genes | Gap runs | Telomere scan |
|---|---|---|---|---|
| TK1151 | TK1151_GWHBCHF00000000 |
45224 | 1917 | 0/9 |
| OH-1004 | OH1004_GCA_047496595.1 |
40057 | 131 | 0/711 |
Query Interpretation
Input ID
JCVI_TKOH_00233
Query type
Block ID
Crosswalk plus synteny evidence
Resolved gene
None
No rubber dandelion gene was resolved
Linked evidence
0 / 1 / 23
crosswalk / blocks / anchors
Best block:
JCVI_TKOH_00233The query resolves to a synteny-block ID. Block span and anchor genes are shown first.
Linear Synteny View
The best synteny block for the current query is shown as a linear ribbon.
High
Medium
Other
Only the first 12 anchors are drawn
The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.
Current Query Evidence
No ID correspondence record is available for the current query.
Synteny Evidence
| Block | Query location | Target location | Orientation | Current mapped anchors | Confidence | Note |
|---|---|---|---|---|---|---|
JCVI_TKOH_00233 |
Chr05:30747195-32361941 | Chr04:46673623-48183072 | mixed | 23 | High | Formal JCVI synteny block from rebuilt ID map pipeline. |
Block Anchor Genes
Total anchors: 23 · Showing 1–23 · Page 1/1
| TK1151 gene | OH-1004 gene | Block | Identity | Coverage | Confidence |
|---|---|---|---|---|---|
TkA05G115160 | LXL04_019996 | JCVI_TKOH_00233 | 88.2 | 99.631 / 99.468 | Review |
TkA05G115170 | LXL04_019997 | JCVI_TKOH_00233 | 100.0 | 100.0 / 100.0 | Complex |
TkA05G115510 | LXL04_019998 | JCVI_TKOH_00233 | 95.3 | 80.556 / 97.623 | Complex |
TkA05G115630 | LXL04_019999 | JCVI_TKOH_00233 | 100.0 | 100.0 / 100.0 | Complex |
TkA05G115970 | LXL04_020000 | JCVI_TKOH_00233 | 97.7 | 100.0 / 100.0 | Strict |
TkA05G116330 | LXL04_020002 | JCVI_TKOH_00233 | 87.7 | 87.124 / 20.417 | Complex |
TkA05G116590 | LXL04_020002 | JCVI_TKOH_00233 | 92.0 | 100.0 / 97.812 | Probable |
TkA05G116820 | LXL04_020003 | JCVI_TKOH_00233 | 91.9 | 100.0 / 100.0 | Probable |
TkA05G116880 | LXL04_020004 | JCVI_TKOH_00233 | 98.0 | 100.0 / 79.767 | Probable |
TkA05G117110 | LXL04_020017 | JCVI_TKOH_00233 | 72.3 | 99.25 / 79.741 | Review |
TkA05G117410 | LXL04_020010 | JCVI_TKOH_00233 | 90.4 | 92.517 / 50.752 | Review |
TkA05G117420 | LXL04_020030 | JCVI_TKOH_00233 | 84.8 | 90.055 / 93.75 | Complex |
TkA05G117740 | LXL04_020026 | JCVI_TKOH_00233 | 79.8 | 97.906 / 62.258 | Review |
TkA05G117960 | LXL04_020029 | JCVI_TKOH_00233 | 100.0 | 100.0 / 94.958 | Review |
TkA05G117980 | LXL04_020030 | JCVI_TKOH_00233 | 73.3 | 89.944 / 100.0 | Complex |
TkA05G118170 | LXL04_020010 | JCVI_TKOH_00233 | 92.5 | 74.074 / 30.075 | Complex |
TkA05G118180 | LXL04_020030 | JCVI_TKOH_00233 | 88.2 | 99.219 / 72.159 | Complex |
TkA05G118840 | LXL04_020010 | JCVI_TKOH_00233 | 92.4 | 80.864 / 49.624 | Complex |
TkA05G118850 | LXL04_020030 | JCVI_TKOH_00233 | 77.8 | 86.029 / 66.477 | Complex |
TkA05G121020 | LXL04_020030 | JCVI_TKOH_00233 | 79.2 | 98.361 / 68.182 | Complex |
TkA05G121990 | LXL04_020033 | JCVI_TKOH_00233 | 98.9 | 55.108 / 100.0 | Review |
TkA05G122250 | LXL04_020041 | JCVI_TKOH_00233 | 95.6 | 100.0 / 100.0 | Complex |
TkA05G122460 | LXL04_020043 | JCVI_TKOH_00233 | 99.6 | 100.0 / 100.0 | Strict |