Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00086

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 33

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00086

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00086 Chr02 68470526-72613362 Chr03 99888017-105043837 mixed High 33 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00086`	Chr02:68470526-72613362	Chr03:99888017-105043837	mixed	33	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 33 · Showing 1–33 · Page 1/1

Download All Anchors TSV

TkA02G267910 → LXL04_015947

98.2%

TkA02G269270 → LXL04_015950

99.8%

TkA02G269360 → LXL04_015951

96.0%

TkA02G270790 → LXL04_015957

99.2%

TkA02G271060 → LXL04_015959

97.0%

TkA02G271480 → LXL04_015962

94.9%

TkA02G271500 → LXL04_015964

100.0%

TkA02G272080 → LXL04_015965

91.6%

TkA02G273700 → LXL04_015969

97.9%

TkA02G273760 → LXL04_015971

98.5%

TkA02G273950 → LXL04_015973

98.4%

TkA02G275030 → LXL04_015985

98.4%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA02G267910`	`LXL04_015947`	`JCVI_TKOH_00086`	98.2	100.0 / 100.0	Complex
`TkA02G269270`	`LXL04_015950`	`JCVI_TKOH_00086`	99.8	100.0 / 100.0	Complex
`TkA02G269360`	`LXL04_015951`	`JCVI_TKOH_00086`	96.0	100.0 / 89.336	Review
`TkA02G270790`	`LXL04_015957`	`JCVI_TKOH_00086`	99.2	98.374 / 100.0	Complex
`TkA02G271060`	`LXL04_015959`	`JCVI_TKOH_00086`	97.0	100.0 / 72.628	Complex
`TkA02G271480`	`LXL04_015962`	`JCVI_TKOH_00086`	94.9	94.43 / 68.199	Complex
`TkA02G271500`	`LXL04_015964`	`JCVI_TKOH_00086`	100.0	100.0 / 66.667	Complex
`TkA02G272080`	`LXL04_015965`	`JCVI_TKOH_00086`	91.6	100.0 / 100.0	Probable
`TkA02G273700`	`LXL04_015969`	`JCVI_TKOH_00086`	97.9	100.0 / 100.0	Strict
`TkA02G273760`	`LXL04_015971`	`JCVI_TKOH_00086`	98.5	100.0 / 34.595	Review
`TkA02G273950`	`LXL04_015973`	`JCVI_TKOH_00086`	98.4	100.0 / 60.196	Review
`TkA02G275030`	`LXL04_015985`	`JCVI_TKOH_00086`	98.4	79.75 / 51.618	Review
`TkA02G276500`	`LXL04_015986`	`JCVI_TKOH_00086`	97.4	100.0 / 100.0	Review
`TkA02G277700`	`LXL04_015997`	`JCVI_TKOH_00086`	97.1	98.849 / 96.695	Strict
`TkA02G278230`	`LXL04_016001`	`JCVI_TKOH_00086`	99.8	93.103 / 57.658	Review
`TkA02G278740`	`LXL04_016006`	`JCVI_TKOH_00086`	100.0	100.0 / 100.0	Strict
`TkA02G280350`	`LXL04_016009`	`JCVI_TKOH_00086`	99.2	96.532 / 85.495	Complex
`TkA02G280930`	`LXL04_016011`	`JCVI_TKOH_00086`	97.7	100.0 / 100.0	Strict
`TkA02G281380`	`LXL04_016013`	`JCVI_TKOH_00086`	87.2	72.5 / 22.585	Review
`TkA02G281590`	`LXL04_016014`	`JCVI_TKOH_00086`	95.7	95.101 / 93.367	Strict
`TkA02G282430`	`LXL04_016017`	`JCVI_TKOH_00086`	92.0	100.0 / 100.0	Probable
`TkA02G282450`	`LXL04_016018`	`JCVI_TKOH_00086`	95.6	100.0 / 100.0	Strict
`TkA02G282760`	`LXL04_016019`	`JCVI_TKOH_00086`	95.5	99.107 / 99.099	Strict
`TkA02G282780`	`LXL04_016020`	`JCVI_TKOH_00086`	94.1	100.0 / 48.0	Review
`TkA02G283330`	`LXL04_016021`	`JCVI_TKOH_00086`	98.5	98.704 / 95.082	Strict
`TkA02G283340`	`LXL04_016022`	`JCVI_TKOH_00086`	99.5	91.701 / 99.55	Complex
`TkA02G283350`	`LXL04_016023`	`JCVI_TKOH_00086`	94.3	75.238 / 76.119	Complex
`TkA02G283390`	`LXL04_016024`	`JCVI_TKOH_00086`	98.7	85.319 / 32.731	Review
`TkA02G283460`	`LXL04_016023`	`JCVI_TKOH_00086`	95.4	72.857 / 73.632	Complex
`TkA02G283860`	`LXL04_016023`	`JCVI_TKOH_00086`	96.1	95.652 / 74.129	Complex
`TkA02G284060`	`LXL04_016027`	`JCVI_TKOH_00086`	98.1	100.0 / 100.0	Complex
`TkA02G284120`	`LXL04_016038`	`JCVI_TKOH_00086`	98.6	100.0 / 100.0	Strict
`TkA02G284400`	`LXL04_016042`	`JCVI_TKOH_00086`	91.8	85.655 / 98.768	Probable