Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00029

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 68

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00029

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00029 Chr01 106311449-110128721 Chr01 51730200-55805557 mixed High 68 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00029`	Chr01:106311449-110128721	Chr01:51730200-55805557	mixed	68	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 68 · Showing 1–68 · Page 1/1

Download All Anchors TSV

TkA01G425900 → LXL04_002715

100.0%

TkA01G425990 → LXL04_002713

99.5%

TkA01G426000 → LXL04_002712

97.5%

TkA01G426130 → LXL04_002711

99.2%

TkA01G426500 → LXL04_002708

99.4%

TkA01G426890 → LXL04_002707

99.9%

TkA01G426900 → LXL04_002707

98.2%

TkA01G426910 → LXL04_002706

99.3%

TkA01G426950 → LXL04_002704

100.0%

TkA01G427210 → LXL04_002697

77.0%

TkA01G427430 → LXL04_002701

87.6%

TkA01G427920 → LXL04_002702

59.2%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA01G425900`	`LXL04_002715`	`JCVI_TKOH_00029`	100.0	46.418 / 68.354	Review
`TkA01G425990`	`LXL04_002713`	`JCVI_TKOH_00029`	99.5	81.781 / 24.862	Review
`TkA01G426000`	`LXL04_002712`	`JCVI_TKOH_00029`	97.5	97.024 / 100.0	Review
`TkA01G426130`	`LXL04_002711`	`JCVI_TKOH_00029`	99.2	100.0 / 100.0	Strict
`TkA01G426500`	`LXL04_002708`	`JCVI_TKOH_00029`	99.4	100.0 / 95.882	Strict
`TkA01G426890`	`LXL04_002707`	`JCVI_TKOH_00029`	99.9	100.0 / 64.097	Complex
`TkA01G426900`	`LXL04_002707`	`JCVI_TKOH_00029`	98.2	100.0 / 31.007	Review
`TkA01G426910`	`LXL04_002706`	`JCVI_TKOH_00029`	99.3	98.675 / 34.057	Review
`TkA01G426950`	`LXL04_002704`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Strict
`TkA01G427210`	`LXL04_002697`	`JCVI_TKOH_00029`	77.0	48.413 / 54.222	Complex
`TkA01G427430`	`LXL04_002701`	`JCVI_TKOH_00029`	87.6	76.033 / 83.983	Complex
`TkA01G427920`	`LXL04_002702`	`JCVI_TKOH_00029`	59.2	35.669 / 25.939	Review
`TkA01G427930`	`LXL04_002695`	`JCVI_TKOH_00029`	99.2	94.872 / 92.25	Strict
`TkA01G428300`	`LXL04_002694`	`JCVI_TKOH_00029`	98.8	97.287 / 100.0	Strict
`TkA01G428310`	`LXL04_002693`	`JCVI_TKOH_00029`	100.0	84.167 / 31.962	Review
`TkA01G428560`	`LXL04_002690`	`JCVI_TKOH_00029`	100.0	90.385 / 50.811	Review
`TkA01G428820`	`LXL04_002689`	`JCVI_TKOH_00029`	96.2	57.353 / 82.105	Complex
`TkA01G430210`	`LXL04_002684`	`JCVI_TKOH_00029`	98.6	100.0 / 100.0	Strict
`TkA01G430310`	`LXL04_002682`	`JCVI_TKOH_00029`	99.8	100.0 / 100.0	Complex
`TkA01G430540`	`LXL04_002680`	`JCVI_TKOH_00029`	98.2	100.0 / 100.0	Complex
`TkA01G430560`	`LXL04_002679`	`JCVI_TKOH_00029`	99.7	100.0 / 96.21	Complex
`TkA01G430570`	`LXL04_002678`	`JCVI_TKOH_00029`	99.3	99.738 / 100.0	Strict
`TkA01G430880`	`LXL04_002676`	`JCVI_TKOH_00029`	98.6	100.0 / 100.0	Strict
`TkA01G430900`	`LXL04_002675`	`JCVI_TKOH_00029`	99.1	90.625 / 100.0	Complex
`TkA01G431020`	`LXL04_002674`	`JCVI_TKOH_00029`	100.0	100.0 / 99.01	Strict
`TkA01G431120`	`LXL04_002672`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Complex
`TkA01G431210`	`LXL04_002667`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Strict
`TkA01G431420`	`LXL04_002665`	`JCVI_TKOH_00029`	97.0	100.0 / 100.0	Strict
`TkA01G432310`	`LXL04_002659`	`JCVI_TKOH_00029`	97.8	100.0 / 100.0	Strict
`TkA01G432320`	`LXL04_002658`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Complex
`TkA01G432590`	`LXL04_002653`	`JCVI_TKOH_00029`	100.0	97.531 / 50.0	Review
`TkA01G432930`	`LXL04_002651`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Strict
`TkA01G433580`	`LXL04_002644`	`JCVI_TKOH_00029`	100.0	98.684 / 71.023	Complex
`TkA01G433710`	`LXL04_002643`	`JCVI_TKOH_00029`	99.9	100.0 / 100.0	Strict
`TkA01G433720`	`LXL04_002642`	`JCVI_TKOH_00029`	99.0	100.0 / 100.0	Strict
`TkA01G433770`	`LXL04_002641`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Review
`TkA01G433780`	`LXL04_002640`	`JCVI_TKOH_00029`	98.7	87.5 / 48.276	Review
`TkA01G433800`	`LXL04_002639`	`JCVI_TKOH_00029`	97.7	100.0 / 100.0	Strict
`TkA01G434380`	`LXL04_002637`	`JCVI_TKOH_00029`	82.3	89.904 / 41.253	Complex
`TkA01G434700`	`LXL04_002634`	`JCVI_TKOH_00029`	99.3	100.0 / 79.57	Complex
`TkA01G434780`	`LXL04_002629`	`JCVI_TKOH_00029`	71.3	100.0 / 75.653	Complex
`TkA01G435210`	`LXL04_002626`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Strict
`TkA01G435360`	`LXL04_002623`	`JCVI_TKOH_00029`	97.8	100.0 / 89.255	Strict
`TkA01G435390`	`LXL04_002619`	`JCVI_TKOH_00029`	98.3	86.861 / 55.607	Review
`TkA01G435660`	`LXL04_002615`	`JCVI_TKOH_00029`	97.1	100.0 / 70.433	Probable
`TkA01G435980`	`LXL04_002611`	`JCVI_TKOH_00029`	100.0	85.455 / 10.387	Review
`TkA01G435990`	`LXL04_002611`	`JCVI_TKOH_00029`	84.6	100.0 / 26.519	Review
`TkA01G436420`	`LXL04_002606`	`JCVI_TKOH_00029`	99.5	100.0 / 100.0	Strict
`TkA01G436440`	`LXL04_002605`	`JCVI_TKOH_00029`	98.7	100.0 / 100.0	Strict
`TkA01G436450`	`LXL04_002604`	`JCVI_TKOH_00029`	99.9	98.623 / 88.835	Complex
`TkA01G436810`	`LXL04_002602`	`JCVI_TKOH_00029`	94.4	100.0 / 100.0	Probable
`TkA01G436850`	`LXL04_002601`	`JCVI_TKOH_00029`	94.6	72.577 / 84.065	Probable
`TkA01G436870`	`LXL04_002600`	`JCVI_TKOH_00029`	100.0	100.0 / 98.242	Strict
`TkA01G437580`	`LXL04_002594`	`JCVI_TKOH_00029`	100.0	80.556 / 100.0	Strict
`TkA01G437680`	`LXL04_002592`	`JCVI_TKOH_00029`	97.0	100.0 / 100.0	Strict
`TkA01G437690`	`LXL04_002591`	`JCVI_TKOH_00029`	99.2	100.0 / 100.0	Strict
`TkA01G437720`	`LXL04_002590`	`JCVI_TKOH_00029`	98.6	41.618 / 64.865	Review
`TkA01G437740`	`LXL04_002589`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Strict
`TkA01G437750`	`LXL04_002588`	`JCVI_TKOH_00029`	100.0	99.598 / 92.884	Strict
`TkA01G437820`	`LXL04_002587`	`JCVI_TKOH_00029`	95.2	100.0 / 100.0	Strict
`TkA01G437910`	`LXL04_002585`	`JCVI_TKOH_00029`	96.3	100.0 / 100.0	Strict
`TkA01G437920`	`LXL04_002584`	`JCVI_TKOH_00029`	98.5	100.0 / 100.0	Complex
`TkA01G438060`	`LXL04_002582`	`JCVI_TKOH_00029`	99.5	99.0 / 75.379	Probable
`TkA01G438140`	`LXL04_002580`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Strict
`TkA01G439810`	`LXL04_002574`	`JCVI_TKOH_00029`	98.3	75.705 / 45.982	Complex
`TkA01G440000`	`LXL04_002572`	`JCVI_TKOH_00029`	100.0	100.0 / 100.0	Strict
`TkA01G440010`	`LXL04_002571`	`JCVI_TKOH_00029`	99.8	99.38 / 50.472	Review
`TkA01G440580`	`LXL04_002565`	`JCVI_TKOH_00029`	99.8	97.779 / 97.779	Strict