Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00211

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 36

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00211

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00211 Chr04 56244133-60567838 ChrUn 2023677-6142118 mixed High 36 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00211`	Chr04:56244133-60567838	ChrUn:2023677-6142118	mixed	36	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 36 · Showing 1–36 · Page 1/1

Download All Anchors TSV

TkA04G220690 → LXL04_039385

95.7%

TkA04G220800 → LXL04_039383

95.6%

TkA04G224110 → LXL04_039378

91.2%

TkA04G226960 → LXL04_039369

97.7%

TkA04G228170 → LXL04_039365

99.3%

TkA04G228680 → LXL04_039364

100.0%

TkA04G228690 → LXL04_039363

94.7%

TkA04G229680 → LXL04_039362

43.8%

TkA04G229750 → LXL04_039359

89.6%

TkA04G229990 → LXL04_039357

99.7%

TkA04G230650 → LXL04_039355

100.0%

TkA04G230740 → LXL04_039345

99.2%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA04G220690`	`LXL04_039385`	`JCVI_TKOH_00211`	95.7	100.0 / 100.0	Probable
`TkA04G220800`	`LXL04_039383`	`JCVI_TKOH_00211`	95.6	100.0 / 96.61	Review
`TkA04G224110`	`LXL04_039378`	`JCVI_TKOH_00211`	91.2	100.0 / 100.0	Probable
`TkA04G226960`	`LXL04_039369`	`JCVI_TKOH_00211`	97.7	100.0 / 100.0	Probable
`TkA04G228170`	`LXL04_039365`	`JCVI_TKOH_00211`	99.3	100.0 / 100.0	Probable
`TkA04G228680`	`LXL04_039364`	`JCVI_TKOH_00211`	100.0	100.0 / 100.0	Probable
`TkA04G228690`	`LXL04_039363`	`JCVI_TKOH_00211`	94.7	100.0 / 100.0	Probable
`TkA04G229680`	`LXL04_039362`	`JCVI_TKOH_00211`	43.8	78.218 / 32.683	Complex
`TkA04G229750`	`LXL04_039359`	`JCVI_TKOH_00211`	89.6	100.0 / 100.0	Review
`TkA04G229990`	`LXL04_039357`	`JCVI_TKOH_00211`	99.7	99.026 / 100.0	Complex
`TkA04G230650`	`LXL04_039355`	`JCVI_TKOH_00211`	100.0	100.0 / 100.0	Complex
`TkA04G230740`	`LXL04_039345`	`JCVI_TKOH_00211`	99.2	100.0 / 100.0	Probable
`TkA04G230750`	`LXL04_039344`	`JCVI_TKOH_00211`	93.7	100.0 / 100.0	Probable
`TkA04G230760`	`LXL04_039343`	`JCVI_TKOH_00211`	97.5	100.0 / 100.0	Complex
`TkA04G230820`	`LXL04_039341`	`JCVI_TKOH_00211`	99.8	100.0 / 100.0	Probable
`TkA04G230840`	`LXL04_039340`	`JCVI_TKOH_00211`	98.3	100.0 / 100.0	Probable
`TkA04G230850`	`LXL04_039339`	`JCVI_TKOH_00211`	100.0	100.0 / 92.254	Probable
`TkA04G230860`	`LXL04_039338`	`JCVI_TKOH_00211`	99.8	100.0 / 98.544	Probable
`TkA04G231320`	`LXL04_039337`	`JCVI_TKOH_00211`	90.9	99.605 / 90.551	Complex
`TkA04G232010`	`LXL04_039335`	`JCVI_TKOH_00211`	89.0	100.0 / 91.703	Complex
`TkA04G232510`	`LXL04_039329`	`JCVI_TKOH_00211`	69.1	100.0 / 99.393	Review
`TkA04G232520`	`LXL04_039328`	`JCVI_TKOH_00211`	100.0	100.0 / 66.809	Complex
`TkA04G233160`	`LXL04_039326`	`JCVI_TKOH_00211`	99.1	95.339 / 66.176	Complex
`TkA04G233270`	`LXL04_039324`	`JCVI_TKOH_00211`	100.0	100.0 / 100.0	Review
`TkA04G233780`	`LXL04_039335`	`JCVI_TKOH_00211`	93.3	100.0 / 91.703	Review
`TkA04G233860`	`LXL04_039334`	`JCVI_TKOH_00211`	90.3	94.633 / 66.057	Complex
`TkA04G233890`	`LXL04_039332`	`JCVI_TKOH_00211`	100.0	100.0 / 100.0	Review
`TkA04G234240`	`LXL04_039330`	`JCVI_TKOH_00211`	99.2	100.0 / 100.0	Complex
`TkA04G234380`	`LXL04_039329`	`JCVI_TKOH_00211`	76.2	99.282 / 41.355	Complex
`TkA04G234390`	`LXL04_039328`	`JCVI_TKOH_00211`	100.0	100.0 / 100.0	Review
`TkA04G235070`	`LXL04_039324`	`JCVI_TKOH_00211`	98.6	80.435 / 56.705	Complex
`TkA04G235600`	`LXL04_039323`	`JCVI_TKOH_00211`	97.1	100.0 / 100.0	Probable
`TkA04G235630`	`LXL04_039322`	`JCVI_TKOH_00211`	91.7	100.0 / 100.0	Complex
`TkA04G237160`	`LXL04_039319`	`JCVI_TKOH_00211`	91.3	100.0 / 100.0	Complex
`TkA04G237190`	`LXL04_039317`	`JCVI_TKOH_00211`	98.4	100.0 / 71.595	Complex
`TkA04G238120`	`LXL04_039315`	`JCVI_TKOH_00211`	97.2	100.0 / 100.0	Review