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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

LXL04_039329
Reference: OH-1004 Chr: JAJTUU010000010.1 Coordinates: 3176507-3179476 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2970 bp · LXL04_039329|LXL04_039329|OH1004|cDNA

ATGAATTTACATCGCGCGATGCATCTTTCAGGAACCTTCATCAACCCCATTATCTCAGTTCTTTTACAGAAGGGCTTCTCCGAAATCACCAACGAGCTTGTTGGAAAATCGCTACATGCTTTTTGTATAAAGAATTTCGTCCGTTTAAGCATATTCCATACAAATACGTTAATCAGTTTGTACTCAAAGCACGGCAAAACCGAAGCTGCAAGGcacctgttcgatgaaatgcctcagAGAAACGAAGCTACATGGAACAC...

CDS

Download CDS FASTA

2970 bp · LXL04_039329|LXL04_039329|OH1004|CDS

ATGAATTTACATCGCGCGATGCATCTTTCAGGAACCTTCATCAACCCCATTATCTCAGTTCTTTTACAGAAGGGCTTCTCCGAAATCACCAACGAGCTTGTTGGAAAATCGCTACATGCTTTTTGTATAAAGAATTTCGTCCGTTTAAGCATATTCCATACAAATACGTTAATCAGTTTGTACTCAAAGCACGGCAAAACCGAAGCTGCAAGGCACCTGTTCGATGAAATGCCTCAGAGAAACGAAGCTACATGGAACAC...

Protein

Download Protein FASTA

989 aa · LXL04_039329|LXL04_039329|OH1004|PROTEIN

MNLHRAMHLSGTFINPIISVLLQKGFSEITNELVGKSLHAFCIKNFVRLSIFHTNTLISLYSKHGKTEAARHLFDEMPQRNEATWNTIISALVRVSLHSSAFLLFTQMRAQGFNTSGFVIASLLTGCTDSLIMLHEGFQIHGLITKNGLSHNVYAGTALLNFYSTYGFHSNAHSLFDNMPEKNVVSWTSLMVGYSNNGNRMEVINLYNKMKQENVKCNQNTFTTVITSLEDKPFSLLQVLVDVIKCGFEHDVSVSNSLIS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDLXL04_039329
Source versionOH-1004 / GCA_047496595.1_OSU_TarKok_2.0
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDLXL04_039329
LocationJAJTUU010000010.1:3176507-3179476 (+)
DescriptionSimilar to PCMP-H42: Pentatricopeptide repeat-containing protein At4g13650
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g13650 Pentatricopeptide repeat-containing protein At4g13650. No verified direct reference in this release
At5g09950 Putative pentatricopeptide repeat-containing protein At5g09950. No verified direct reference in this release
At4g33170 Pentatricopeptide repeat-containing protein At4g33170. No verified direct reference in this release
At2g27610 Pentatricopeptide repeat-containing protein At2g27610. No verified direct reference in this release
At3g03580 Pentatricopeptide repeat-containing protein At3g03580. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_039329 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)
GO:0009451 RNA modification Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0003723 RNA binding Molecular Function
GO:0003729 mRNA binding Molecular Function
GO:0008270 zinc ion binding Molecular Function
KEGG gene cross-reference
ath:AT4G13650
ath:AT5G09950
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.650
Rank 1 · LXL04_039329 · OH-1004
Plastid0.197
Rank 2 · LXL04_039329 · OH-1004
Nucleus0.055
Rank 3 · LXL04_039329 · OH-1004
Cytoplasm0.034
Rank 4 · LXL04_039329 · OH-1004
Cell membrane0.006
Rank 5 · LXL04_039329 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13041.13PPR_251-81 aa
PF01535.27PPR55-81 aa
PF13041.13PPR_281-127 aa
PF13041.13PPR_2182-229 aa
PF01535.27PPR185-215 aa
PF13041.13PPR_2383-430 aa
PF12854.14PPR_1383-410 aa
PF01535.27PPR385-414 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
LXL04_039329PF13041.13PPR_251811.6e-93307.4
LXL04_039329PF01535.27PPR55816.1e-84271.3
LXL04_039329PF13041.13PPR_2811271.6e-93307.4
LXL04_039329PF13041.13PPR_21822291.6e-93307.4
LXL04_039329PF01535.27PPR1852156.1e-84271.3
LXL04_039329PF13041.13PPR_23834301.6e-93307.4
LXL04_039329PF12854.14PPR_13834101.6e-44150.0
LXL04_039329PF01535.27PPR3854146.1e-84271.3
LXL04_039329PF13812.13PPR_33854325.9e-38129.5
LXL04_039329PF13041.13PPR_24845291.6e-93307.4
LXL04_039329PF01535.27PPR4865146.1e-84271.3
LXL04_039329PF13041.13PPR_25826261.6e-93307.4
LXL04_039329PF13041.13PPR_26847291.6e-93307.4
LXL04_039329PF01535.27PPR6847146.1e-84271.3
LXL04_039329PF20431.5E_motif7998614.6e-1969.1
LXL04_039329PF14432.13DYW_deaminase8979896.3e-41138.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9SVP7Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g1365033.126%Swiss-Protmoderate database homology
Q9FIB2Arabidopsis thalianaPutative pentatricopeptide repeat-containing protein At5g0995034.631%Swiss-Protmoderate database homology
Q9SMZ2Arabidopsis thalianaPentatricopeptide repeat-containing protein At4g3317033.539%Swiss-Protmoderate database homology
Q9ZUW3Arabidopsis thalianaPentatricopeptide repeat-containing protein At2g2761035.913%Swiss-Protmoderate database homology
Q9SS60Arabidopsis thalianaPentatricopeptide repeat-containing protein At3g0358034.798%Swiss-Protmoderate database homology

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