Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00127

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 67

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00127

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00127 Chr03 20268159-26349198 Chr02 27386627-32931504 mixed High 67 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00127`	Chr03:20268159-26349198	Chr02:27386627-32931504	mixed	67	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 67 · Showing 1–67 · Page 1/1

Download All Anchors TSV

TkA03G079590 → LXL04_006841

98.9%

TkA03G080100 → LXL04_006847

99.6%

TkA03G080370 → LXL04_006848

92.9%

TkA03G080700 → LXL04_006849

100.0%

TkA03G081100 → LXL04_006850

100.0%

TkA03G081220 → LXL04_006852

98.6%

TkA03G081240 → LXL04_006853

99.6%

TkA03G081360 → LXL04_006855

100.0%

TkA03G081500 → LXL04_006856

99.6%

TkA03G081780 → LXL04_006861

94.3%

TkA03G082870 → LXL04_006862

99.2%

TkA03G082880 → LXL04_006863

94.5%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA03G079590`	`LXL04_006841`	`JCVI_TKOH_00127`	98.9	71.429 / 68.702	Review
`TkA03G080100`	`LXL04_006847`	`JCVI_TKOH_00127`	99.6	96.575 / 98.947	Strict
`TkA03G080370`	`LXL04_006848`	`JCVI_TKOH_00127`	92.9	100.0 / 70.149	Probable
`TkA03G080700`	`LXL04_006849`	`JCVI_TKOH_00127`	100.0	100.0 / 100.0	Strict
`TkA03G081100`	`LXL04_006850`	`JCVI_TKOH_00127`	100.0	100.0 / 100.0	Strict
`TkA03G081220`	`LXL04_006852`	`JCVI_TKOH_00127`	98.6	90.476 / 53.571	Review
`TkA03G081240`	`LXL04_006853`	`JCVI_TKOH_00127`	99.6	99.217 / 100.0	Strict
`TkA03G081360`	`LXL04_006855`	`JCVI_TKOH_00127`	100.0	97.861 / 32.049	Review
`TkA03G081500`	`LXL04_006856`	`JCVI_TKOH_00127`	99.6	100.0 / 100.0	Strict
`TkA03G081780`	`LXL04_006861`	`JCVI_TKOH_00127`	94.3	93.805 / 91.379	Complex
`TkA03G082870`	`LXL04_006862`	`JCVI_TKOH_00127`	99.2	100.0 / 100.0	Strict
`TkA03G082880`	`LXL04_006863`	`JCVI_TKOH_00127`	94.5	100.0 / 100.0	Probable
`TkA03G083130`	`LXL04_006865`	`JCVI_TKOH_00127`	99.8	100.0 / 100.0	Complex
`TkA03G084160`	`LXL04_006868`	`JCVI_TKOH_00127`	98.8	100.0 / 100.0	Strict
`TkA03G084500`	`LXL04_006869`	`JCVI_TKOH_00127`	100.0	100.0 / 100.0	Strict
`TkA03G084520`	`LXL04_006870`	`JCVI_TKOH_00127`	98.1	100.0 / 76.866	Probable
`TkA03G085180`	`LXL04_006874`	`JCVI_TKOH_00127`	92.0	94.424 / 100.0	Probable
`TkA03G085200`	`LXL04_006876`	`JCVI_TKOH_00127`	88.1	50.467 / 22.264	Complex
`TkA03G085220`	`LXL04_006877`	`JCVI_TKOH_00127`	88.3	100.0 / 100.0	Review
`TkA03G085360`	`LXL04_006885`	`JCVI_TKOH_00127`	68.7	92.654 / 33.958	Complex
`TkA03G085590`	`LXL04_006897`	`JCVI_TKOH_00127`	78.6	99.029 / 13.446	Complex
`TkA03G085630`	`LXL04_006883`	`JCVI_TKOH_00127`	92.5	98.529 / 50.912	Complex
`TkA03G085730`	`LXL04_006885`	`JCVI_TKOH_00127`	66.1	75.703 / 33.306	Complex
`TkA03G085900`	`LXL04_006885`	`JCVI_TKOH_00127`	99.7	98.168 / 52.362	Review
`TkA03G085910`	`LXL04_006886`	`JCVI_TKOH_00127`	99.5	99.848 / 57.568	Review
`TkA03G085920`	`LXL04_006886`	`JCVI_TKOH_00127`	99.8	94.655 / 37.183	Review
`TkA03G085970`	`LXL04_006897`	`JCVI_TKOH_00127`	94.9	96.875 / 20.627	Complex
`TkA03G085980`	`LXL04_006887`	`JCVI_TKOH_00127`	99.5	100.0 / 100.0	Complex
`TkA03G086090`	`LXL04_006904`	`JCVI_TKOH_00127`	89.5	95.915 / 37.283	Complex
`TkA03G086460`	`LXL04_006904`	`JCVI_TKOH_00127`	90.0	99.054 / 48.786	Review
`TkA03G086890`	`LXL04_006904`	`JCVI_TKOH_00127`	83.6	100.0 / 24.335	Complex
`TkA03G087180`	`LXL04_006904`	`JCVI_TKOH_00127`	86.3	96.296 / 13.121	Complex
`TkA03G087280`	`LXL04_006904`	`JCVI_TKOH_00127`	85.3	99.8 / 29.48	Complex
`TkA03G087300`	`LXL04_006885`	`JCVI_TKOH_00127`	75.5	95.507 / 52.28	Complex
`TkA03G087310`	`LXL04_006910`	`JCVI_TKOH_00127`	99.7	98.148 / 61.12	Complex
`TkA03G088620`	`LXL04_006913`	`JCVI_TKOH_00127`	93.4	100.0 / 100.0	Probable
`TkA03G088650`	`LXL04_006914`	`JCVI_TKOH_00127`	99.6	100.0 / 92.691	Complex
`TkA03G088680`	`LXL04_006916`	`JCVI_TKOH_00127`	100.0	100.0 / 76.0	Probable
`TkA03G088840`	`LXL04_006914`	`JCVI_TKOH_00127`	68.5	69.69 / 97.01	Complex
`TkA03G088850`	`LXL04_006919`	`JCVI_TKOH_00127`	89.3	100.0 / 100.0	Review
`TkA03G089460`	`LXL04_006922`	`JCVI_TKOH_00127`	86.9	98.28 / 82.392	Review
`TkA03G089480`	`LXL04_006923`	`JCVI_TKOH_00127`	99.6	100.0 / 100.0	Strict
`TkA03G089650`	`LXL04_006926`	`JCVI_TKOH_00127`	99.3	100.0 / 69.626	Complex
`TkA03G090040`	`LXL04_006930`	`JCVI_TKOH_00127`	100.0	100.0 / 100.0	Strict
`TkA03G090680`	`LXL04_006931`	`JCVI_TKOH_00127`	100.0	100.0 / 23.459	Review
`TkA03G090690`	`LXL04_006932`	`JCVI_TKOH_00127`	98.7	100.0 / 86.364	Strict
`TkA03G090830`	`LXL04_006933`	`JCVI_TKOH_00127`	99.5	99.693 / 91.926	Strict
`TkA03G093990`	`LXL04_006944`	`JCVI_TKOH_00127`	96.4	69.543 / 33.496	Complex
`TkA03G094330`	`LXL04_006944`	`JCVI_TKOH_00127`	97.4	71.698 / 37.164	Complex
`TkA03G094840`	`LXL04_006947`	`JCVI_TKOH_00127`	99.1	100.0 / 100.0	Strict
`TkA03G096600`	`LXL04_006967`	`JCVI_TKOH_00127`	98.2	38.356 / 76.712	Review
`TkA03G096910`	`LXL04_006961`	`JCVI_TKOH_00127`	75.6	26.174 / 77.551	Complex
`TkA03G096920`	`LXL04_006961`	`JCVI_TKOH_00127`	75.6	26.174 / 77.551	Complex
`TkA03G097050`	`LXL04_006968`	`JCVI_TKOH_00127`	94.7	100.0 / 89.27	Probable
`TkA03G097110`	`LXL04_006971`	`JCVI_TKOH_00127`	100.0	100.0 / 89.506	Review
`TkA03G100930`	`LXL04_006950`	`JCVI_TKOH_00127`	99.7	100.0 / 100.0	Strict
`TkA03G100960`	`LXL04_006951`	`JCVI_TKOH_00127`	96.7	100.0 / 98.587	Strict
`TkA03G100970`	`LXL04_006952`	`JCVI_TKOH_00127`	85.8	95.07 / 64.958	Review
`TkA03G100980`	`LXL04_006954`	`JCVI_TKOH_00127`	92.8	99.491 / 99.486	Probable
`TkA03G101350`	`LXL04_006956`	`JCVI_TKOH_00127`	95.3	100.0 / 100.0	Strict
`TkA03G101380`	`LXL04_006958`	`JCVI_TKOH_00127`	99.7	91.761 / 62.476	Review
`TkA03G101640`	`LXL04_006972`	`JCVI_TKOH_00127`	94.3	94.224 / 89.691	Complex
`TkA03G101700`	`LXL04_006985`	`JCVI_TKOH_00127`	89.0	100.0 / 100.0	Complex
`TkA03G101810`	`LXL04_006976`	`JCVI_TKOH_00127`	71.9	94.652 / 100.0	Complex
`TkA03G102660`	`LXL04_006979`	`JCVI_TKOH_00127`	91.2	76.817 / 98.886	Probable
`TkA03G102940`	`LXL04_006985`	`JCVI_TKOH_00127`	94.7	100.0 / 79.878	Complex
`TkA03G103140`	`LXL04_006988`	`JCVI_TKOH_00127`	100.0	100.0 / 100.0	Complex