LXL04_006886 | RubberDandelionOmics

Gene overview

LXL04_006886

Reference: OH-1004 Chr: Chr02 Coordinates: 28688294-28696158 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3432 bp · LXL04_006886|LXL04_006886|OH1004|cDNA

ATGTTACCTGCACCTATCAAGAATACAAATTCCTCATCCTCTTCCGTACTGCCAGACCAGAGATGTCAACATTTTACTGTCGCTGAGATTGTATCGGCAACAAACAACTTCGACAAGAGTTTAGTAATCGGCCGTGGAGGATTCGGGAAGGTGTATAAAGGCCGCATCAAGATTGGGTCAGTAAGCGAAGTTGCAATTAAACGATTGCGTTCCAACTCCAATCAAGGAGCCCATGAATTTGAAGCTGAAGTTCAGGTTCT...

CDS

Download CDS FASTA

3432 bp · LXL04_006886|LXL04_006886|OH1004|CDS

ATGTTACCTGCACCTATCAAGAATACAAATTCCTCATCCTCTTCCGTACTGCCAGACCAGAGATGTCAACATTTTACTGTCGCTGAGATTGTATCGGCAACAAACAACTTCGACAAGAGTTTAGTAATCGGCCGTGGAGGATTCGGGAAGGTGTATAAAGGCCGCATCAAGATTGGGTCAGTAAGCGAAGTTGCAATTAAACGATTGCGTTCCAACTCCAATCAAGGAGCCCATGAATTTGAAGCTGAAGTTCAGGTTCT...

Protein

Download Protein FASTA

1143 aa · LXL04_006886|LXL04_006886|OH1004|PROTEIN

MLPAPIKNTNSSSSSVLPDQRCQHFTVAEIVSATNNFDKSLVIGRGGFGKVYKGRIKIGSVSEVAIKRLRSNSNQGAHEFEAEVQVLSKLRHGNLVSLIGFCKKGNKMALVYEFMPNGTLEEKLHKPDSFLSLLQRLKICIGAARGLDYLHTGTSTQHGVIHRDVKSSNILLDANFDAKIADFGLARFGLIDRTHVSTAVKGTFGYMDPCYFYTGKLTTSSDVYAFGVVLFEVLTGKKAVDSTLDEEQWGLAPWAQHQIK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_006886`
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

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Basic Information and Functional Annotation

Gene ID LXL04_006886

Location Chr02:28688294-28696158 (+)

Description No functional description available

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g51550`	May regulate MLO7 polarization in female gametophyte synergid cells to control pollen tube growth and male gamete delivery during fertilization.	FERONIA receptor-like kinase regulates RHO GTPase signaling of root hair development.2010 · DOI: 10.1073/pnas.1005366107
`At5g39000`	Putative receptor-like protein kinase At5g39000.	No verified direct reference in this release
`At5g38990`	Probable receptor-like protein kinase At5g38990.	No verified direct reference in this release
`At3g04690`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release
`At5g28680`	Receptor-like protein kinase that controls pollen tube behavior by directing rupture at proper timing to release the sperm cell.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_006886 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009723 response to ethylene Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009741 response to brassinosteroid Biological Process

GO:0009742 brassinosteroid mediated signaling pathway Biological Process

GO:0009788 negative regulation of abscisic acid-activated signaling pathway Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0009873 ethylene-activated signaling pathway Biological Process

GO:0010038 response to metal ion Biological Process

GO:0010118 stomatal movement Biological Process

GO:0010483 pollen tube reception Biological Process

GO:0030308 negative regulation of cell growth Biological Process

GO:0032922 circadian regulation of gene expression Biological Process

KEGG gene cross-reference

ath:AT3G51550

ath:AT5G39000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.521

Rank 1 · LXL04_006886 · OH-1004

Cell membrane0.328

Rank 2 · LXL04_006886 · OH-1004

Nucleus0.268

Rank 3 · LXL04_006886 · OH-1004

Endoplasmic reticulum0.049

Rank 4 · LXL04_006886 · OH-1004

Lysosome / Vacuole0.042

Rank 5 · LXL04_006886 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase41-306 aa

PF07714.24PK_Tyr_Ser-Thr42-307 aa

PF07714.24PK_Tyr_Ser-Thr413-646 aa

PF00069.32Pkinase414-645 aa

PF07714.24PK_Tyr_Ser-Thr735-1001 aa

PF00069.32Pkinase735-999 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_006886	`PF00069.32`	Pkinase	41	306	1.3e-97	327.1
LXL04_006886	`PF07714.24`	PK_Tyr_Ser-Thr	42	307	4.8e-112	374.2
LXL04_006886	`PF07714.24`	PK_Tyr_Ser-Thr	413	646	4.8e-112	374.2
LXL04_006886	`PF00069.32`	Pkinase	414	645	1.3e-97	327.1
LXL04_006886	`PF07714.24`	PK_Tyr_Ser-Thr	735	1001	4.8e-112	374.2
LXL04_006886	`PF00069.32`	Pkinase	735	999	1.3e-97	327.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SCZ4`	Arabidopsis thaliana	Receptor-like protein kinase FERONIA	52.778%	Swiss-Prot	weak database homology
`Q9FID8`	Arabidopsis thaliana	Putative receptor-like protein kinase At5g39000	49.686%	Swiss-Prot	weak database homology
`Q9FID9`	Arabidopsis thaliana	Probable receptor-like protein kinase At5g38990	50.321%	Swiss-Prot	weak database homology
`Q9SR05`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR1	50.658%	Swiss-Prot	weak database homology
`Q3E8W4`	Arabidopsis thaliana	Receptor-like protein kinase ANXUR2	50.993%	Swiss-Prot	weak database homology

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