Orthology / Synteny Evidence

Inspect cross-reference orthology and synteny-block evidence.

TkA01G624900 LXL04_000258 JCVI_TKOH_00001 Gene ID Converter

Evidence boundary: TK1151 and OH-1004 are different materials of the same species. This page shows ortholog and synteny ID correspondence between two reference genomes, not a same-cultivar genome-version upgrade. Blocks are based on DIAMOND RBH plus coordinate-order anchors and can be further refined by MCScanX/JCVI. JCVI_TKOH_ block IDs are also accepted.

Global Block Summary

Synteny blocks

427

ID converter records

84884

High confidence

302

Medium confidence

125

Material	Assembly	Genes	Gap runs	Telomere scan
TK1151	`TK1151_GWHBCHF00000000`	45224	1917	0/9
OH-1004	`OH1004_GCA_047496595.1`	40057	131	0/711

Query Interpretation

Input ID

JCVI_TKOH_00028

Query type

Block ID

Crosswalk plus synteny evidence

Resolved gene

None

No rubber dandelion gene was resolved

Linked evidence

0 / 1 / 89

crosswalk / blocks / anchors

Best block: JCVI_TKOH_00028

The query resolves to a synteny-block ID. Block span and anchor genes are shown first.

Gene ID Converter Download current result

Linear Synteny View

The best synteny block for the current query is shown as a linear ribbon.

JCVI_TKOH_00028 Chr01 102042714-106054136 Chr01 57354794-61717444 mixed High 89 anchors

High Medium Other Only the first 12 anchors are drawn

The anchor table is paginated; TSV contains all anchors for the current query. The ribbon shows only a partial linear backbone of the current block.

Current Query Evidence

No ID correspondence record is available for the current query.

Synteny Evidence

Block	Query location	Target location	Orientation	Current mapped anchors	Confidence	Note
`JCVI_TKOH_00028`	Chr01:102042714-106054136	Chr01:57354794-61717444	mixed	89	High	Formal JCVI synteny block from rebuilt ID map pipeline.

Block Anchor Genes

Total anchors: 89 · Showing 1–89 · Page 1/1

Download All Anchors TSV

TkA01G408920 → LXL04_002935

47.6%

TkA01G410890 → LXL04_002918

86.8%

TkA01G411000 → LXL04_002917

100.0%

TkA01G411040 → LXL04_002917

100.0%

TkA01G411090 → LXL04_002916

99.2%

TkA01G411110 → LXL04_002915

97.1%

TkA01G411850 → LXL04_002911

74.4%

TkA01G411910 → LXL04_002910

98.0%

TkA01G412330 → LXL04_002904

100.0%

TkA01G412480 → LXL04_002900

99.2%

TkA01G412830 → LXL04_002898

78.3%

TkA01G412890 → LXL04_002896

97.7%

TK1151 gene	OH-1004 gene	Block	Identity	Coverage	Confidence
`TkA01G408920`	`LXL04_002935`	`JCVI_TKOH_00028`	47.6	85.794 / 68.874	Complex
`TkA01G410890`	`LXL04_002918`	`JCVI_TKOH_00028`	86.8	63.423 / 86.656	Review
`TkA01G411000`	`LXL04_002917`	`JCVI_TKOH_00028`	100.0	100.0 / 39.946	Review
`TkA01G411040`	`LXL04_002917`	`JCVI_TKOH_00028`	100.0	100.0 / 39.946	Review
`TkA01G411090`	`LXL04_002916`	`JCVI_TKOH_00028`	99.2	100.0 / 100.0	Strict
`TkA01G411110`	`LXL04_002915`	`JCVI_TKOH_00028`	97.1	98.81 / 67.667	Review
`TkA01G411850`	`LXL04_002911`	`JCVI_TKOH_00028`	74.4	100.0 / 83.007	Review
`TkA01G411910`	`LXL04_002910`	`JCVI_TKOH_00028`	98.0	100.0 / 100.0	Strict
`TkA01G412330`	`LXL04_002904`	`JCVI_TKOH_00028`	100.0	86.992 / 55.297	Review
`TkA01G412480`	`LXL04_002900`	`JCVI_TKOH_00028`	99.2	100.0 / 68.571	Complex
`TkA01G412830`	`LXL04_002898`	`JCVI_TKOH_00028`	78.3	100.0 / 77.703	Review
`TkA01G412890`	`LXL04_002896`	`JCVI_TKOH_00028`	97.7	100.0 / 100.0	Strict
`TkA01G413330`	`LXL04_002891`	`JCVI_TKOH_00028`	99.8	99.808 / 85.655	Strict
`TkA01G414420`	`LXL04_002884`	`JCVI_TKOH_00028`	99.0	100.0 / 100.0	Complex
`TkA01G414450`	`LXL04_002882`	`JCVI_TKOH_00028`	86.1	68.608 / 100.0	Complex
`TkA01G414560`	`LXL04_002881`	`JCVI_TKOH_00028`	98.5	99.2 / 72.77	Complex
`TkA01G414780`	`LXL04_002879`	`JCVI_TKOH_00028`	99.2	100.0 / 100.0	Review
`TkA01G414850`	`LXL04_002876`	`JCVI_TKOH_00028`	98.5	99.005 / 93.868	Review
`TkA01G415240`	`LXL04_002875`	`JCVI_TKOH_00028`	100.0	100.0 / 62.366	Complex
`TkA01G415300`	`LXL04_002874`	`JCVI_TKOH_00028`	100.0	99.048 / 95.413	Review
`TkA01G415310`	`LXL04_002873`	`JCVI_TKOH_00028`	99.2	100.0 / 100.0	Strict
`TkA01G415340`	`LXL04_002871`	`JCVI_TKOH_00028`	99.1	82.143 / 40.351	Review
`TkA01G415360`	`LXL04_002870`	`JCVI_TKOH_00028`	85.8	92.15 / 73.566	Complex
`TkA01G415610`	`LXL04_002868`	`JCVI_TKOH_00028`	96.6	100.0 / 100.0	Strict
`TkA01G416050`	`LXL04_002862`	`JCVI_TKOH_00028`	99.2	100.0 / 100.0	Complex
`TkA01G416160`	`LXL04_002857`	`JCVI_TKOH_00028`	97.5	84.896 / 55.631	Complex
`TkA01G416310`	`LXL04_002855`	`JCVI_TKOH_00028`	99.4	100.0 / 100.0	Review
`TkA01G416470`	`LXL04_002854`	`JCVI_TKOH_00028`	100.0	100.0 / 100.0	Complex
`TkA01G416590`	`LXL04_002851`	`JCVI_TKOH_00028`	99.4	100.0 / 42.005	Review
`TkA01G417060`	`LXL04_002844`	`JCVI_TKOH_00028`	82.6	99.248 / 36.389	Complex
`TkA01G417100`	`LXL04_002844`	`JCVI_TKOH_00028`	80.9	77.113 / 60.278	Complex
`TkA01G417310`	`LXL04_002844`	`JCVI_TKOH_00028`	100.0	100.0 / 100.0	Complex
`TkA01G417320`	`LXL04_002843`	`JCVI_TKOH_00028`	99.5	100.0 / 100.0	Strict
`TkA01G417330`	`LXL04_002842`	`JCVI_TKOH_00028`	99.6	99.802 / 51.373	Review
`TkA01G417690`	`LXL04_002838`	`JCVI_TKOH_00028`	99.1	100.0 / 100.0	Complex
`TkA01G417730`	`LXL04_002837`	`JCVI_TKOH_00028`	99.3	100.0 / 100.0	Strict
`TkA01G417740`	`LXL04_002836`	`JCVI_TKOH_00028`	98.3	100.0 / 100.0	Strict
`TkA01G417770`	`LXL04_002835`	`JCVI_TKOH_00028`	76.9	100.0 / 96.866	Complex
`TkA01G417910`	`LXL04_002833`	`JCVI_TKOH_00028`	92.9	99.812 / 72.436	Probable
`TkA01G417920`	`LXL04_002833`	`JCVI_TKOH_00028`	98.9	84.951 / 22.436	Complex
`TkA01G417930`	`LXL04_002832`	`JCVI_TKOH_00028`	94.4	100.0 / 37.403	Review
`TkA01G417950`	`LXL04_002831`	`JCVI_TKOH_00028`	98.7	100.0 / 54.839	Review
`TkA01G418260`	`LXL04_002830`	`JCVI_TKOH_00028`	99.5	100.0 / 100.0	Complex
`TkA01G418400`	`LXL04_002828`	`JCVI_TKOH_00028`	98.0	100.0 / 100.0	Strict
`TkA01G418410`	`LXL04_002827`	`JCVI_TKOH_00028`	96.1	100.0 / 100.0	Strict
`TkA01G418460`	`LXL04_002825`	`JCVI_TKOH_00028`	99.2	100.0 / 100.0	Complex
`TkA01G418490`	`LXL04_002824`	`JCVI_TKOH_00028`	98.9	100.0 / 100.0	Complex
`TkA01G418510`	`LXL04_002823`	`JCVI_TKOH_00028`	97.5	100.0 / 100.0	Strict
`TkA01G418710`	`LXL04_002818`	`JCVI_TKOH_00028`	86.8	100.0 / 100.0	Review
`TkA01G418800`	`LXL04_002816`	`JCVI_TKOH_00028`	98.7	100.0 / 93.536	Complex
`TkA01G419080`	`LXL04_002813`	`JCVI_TKOH_00028`	97.9	99.828 / 99.657	Complex
`TkA01G419090`	`LXL04_002812`	`JCVI_TKOH_00028`	99.9	100.0 / 94.767	Strict
`TkA01G419200`	`LXL04_002811`	`JCVI_TKOH_00028`	97.5	100.0 / 100.0	Strict
`TkA01G419220`	`LXL04_002810`	`JCVI_TKOH_00028`	91.0	100.0 / 100.0	Probable
`TkA01G419670`	`LXL04_002806`	`JCVI_TKOH_00028`	100.0	76.8 / 32.107	Complex
`TkA01G419910`	`LXL04_002804`	`JCVI_TKOH_00028`	96.5	100.0 / 82.456	Complex
`TkA01G420260`	`LXL04_002799`	`JCVI_TKOH_00028`	100.0	100.0 / 100.0	Strict
`TkA01G420470`	`LXL04_002798`	`JCVI_TKOH_00028`	100.0	100.0 / 100.0	Strict
`TkA01G420500`	`LXL04_002796`	`JCVI_TKOH_00028`	100.0	97.333 / 77.385	Complex
`TkA01G420510`	`LXL04_002795`	`JCVI_TKOH_00028`	99.5	100.0 / 94.282	Strict
`TkA01G420550`	`LXL04_002794`	`JCVI_TKOH_00028`	99.4	100.0 / 100.0	Strict
`TkA01G420560`	`LXL04_002793`	`JCVI_TKOH_00028`	92.7	100.0 / 100.0	Probable
`TkA01G420570`	`LXL04_002792`	`JCVI_TKOH_00028`	97.6	100.0 / 100.0	Complex
`TkA01G420620`	`LXL04_002791`	`JCVI_TKOH_00028`	99.4	100.0 / 100.0	Review
`TkA01G420870`	`LXL04_002789`	`JCVI_TKOH_00028`	86.2	100.0 / 100.0	Review
`TkA01G420880`	`LXL04_002788`	`JCVI_TKOH_00028`	100.0	100.0 / 100.0	Strict
`TkA01G420890`	`LXL04_002787`	`JCVI_TKOH_00028`	94.1	100.0 / 100.0	Probable
`TkA01G420900`	`LXL04_002786`	`JCVI_TKOH_00028`	100.0	100.0 / 100.0	Strict
`TkA01G421000`	`LXL04_002783`	`JCVI_TKOH_00028`	97.7	100.0 / 87.557	Strict
`TkA01G421010`	`LXL04_002784`	`JCVI_TKOH_00028`	99.9	100.0 / 100.0	Strict
`TkA01G421030`	`LXL04_002782`	`JCVI_TKOH_00028`	99.6	100.0 / 100.0	Complex
`TkA01G421120`	`LXL04_002780`	`JCVI_TKOH_00028`	100.0	83.117 / 83.117	Strict
`TkA01G421130`	`LXL04_002779`	`JCVI_TKOH_00028`	100.0	100.0 / 100.0	Strict
`TkA01G421150`	`LXL04_002778`	`JCVI_TKOH_00028`	70.9	100.0 / 70.606	Complex
`TkA01G421440`	`LXL04_002776`	`JCVI_TKOH_00028`	90.7	100.0 / 100.0	Probable
`TkA01G421720`	`LXL04_002773`	`JCVI_TKOH_00028`	98.0	90.964 / 98.693	Review
`TkA01G421750`	`LXL04_002773`	`JCVI_TKOH_00028`	78.9	84.971 / 96.078	Complex
`TkA01G422060`	`LXL04_002771`	`JCVI_TKOH_00028`	98.4	100.0 / 100.0	Strict
`TkA01G422440`	`LXL04_002770`	`JCVI_TKOH_00028`	95.4	100.0 / 100.0	Strict
`TkA01G422540`	`LXL04_002769`	`JCVI_TKOH_00028`	90.6	100.0 / 70.982	Probable
`TkA01G422630`	`LXL04_002768`	`JCVI_TKOH_00028`	99.4	100.0 / 100.0	Strict
`TkA01G422680`	`LXL04_002765`	`JCVI_TKOH_00028`	98.6	100.0 / 100.0	Strict
`TkA01G423160`	`LXL04_002761`	`JCVI_TKOH_00028`	100.0	99.592 / 77.215	Complex
`TkA01G423250`	`LXL04_002760`	`JCVI_TKOH_00028`	72.0	97.519 / 97.692	Review
`TkA01G424420`	`LXL04_002756`	`JCVI_TKOH_00028`	99.5	96.97 / 78.367	Complex
`TkA01G424450`	`LXL04_002755`	`JCVI_TKOH_00028`	98.2	100.0 / 100.0	Strict
`TkA01G424670`	`LXL04_002754`	`JCVI_TKOH_00028`	98.7	100.0 / 100.0	Strict
`TkA01G424690`	`LXL04_002753`	`JCVI_TKOH_00028`	97.7	49.153 / 49.153	Review
`TkA01G424720`	`LXL04_002752`	`JCVI_TKOH_00028`	100.0	50.211 / 70.414	Review