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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA01G458050
Reference: TK1151 Chr: Chr01 Coordinates: 114694247-114698599 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3739 bp · TkA01G458050|TK1151|cDNA

TGCGACAGTTCTGGAAGACTTTTCTTGTATACAGCCAAGAAACTTCCCAAGAAGAATATACACACGATTGAGTCAAACCTACCCGTTCATAAAAGAAGCAGACATCTAAGACTAAGAGGCTTCTTCTTCTTCTTCTTTCATTCGAACAAAAGCACCTCAATGGCAATGGAATGCGTGCCCCTGATTATCGGCACAATTTTTGAAATAACGAAGATGATTTTCAAGAGCACAAGCAATTCCGACTTGGGAGAGAGCATGGC...

CDS

Download CDS FASTA

2670 bp · TkA01G458050|TK1151|CDS

TGCGACAGTTCTGGAAGACTTTTCTTGTATACAGCCAAGAAACTTCCCAAGAAGAATATACACACGATTGAGTCAAACCTACCCGTTCATAAAAGAAGCAGACATCTAAGACTAAGAGGCTTCTTCTTCTTCTTCTTTCATTCGAACAAAAGCACCTCAATGGCAATGGAATGCGTGCCCCTGATTATCGGCACAATTTTTGAAATAACGAAGATGATTTTCAAGAGCACAAGCAATTCCGACTTGGGAGAGAGCATGGC...

Protein

Download Protein FASTA

889 aa · TkA01G458050|TK1151|PROTEIN

CDSSGRLFLYTAKKLPKKNIHTIESNLPVHKRSRHLRLRGFFFFFFHSNKSTSMAMECVPLIIGTIFEITKMIFKSTSNSDLGESMASMTRALQELTEARKDLETQVEQSQLLGHPPTNQIKGWLERVASVEAEVGMIIEDIESVKQRNCYCCCNCNCGLRFKLSKMVRQKLMMINDLKEKNFNLNGANGGLIPPDMEVVPSGPTIGLDVMLERVHELLMEHDVATLGIYGMGGVGKTTLLKRINNELPQKLEFDVVIWA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA01G458050
TK1151 IDTkA01G458050
OH-1004 IDLXL04_002463
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)95.800
Protein coverage (%)TK1151 93.588 / OH-1004 90.724
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA01G458050
LocationChr01:114694247-114698599 (-)
DescriptionSimilar to RPS2: Disease resistance protein RPS2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g26090 Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. No verified direct reference in this release
At1g12220 Disease resistance (R) protein that specifically recognizes the avrPphB type III effector avirulence protein from Pseudomonas syringae. No verified direct reference in this release
At4g10780 Potential disease resistance protein. No verified direct reference in this release
At1g15890 Probable disease resistance protein. No verified direct reference in this release
At1g12280 Disease resistance protein that mediates defense responses against the bacterial pathogen Pseudomonas syringae pv tomato strain DC3000, and the virulent oomycete Hyaloperonospora arabidopsidis isolate Noco2.
The MEKK1-MKK1/MKK2-MPK4 kinase cascade negatively regulates immunity mediated by a mitogen-activated protein kinase kinase kinase in Arabidopsis.2012 · DOI: 10.1105/tpc.112.097253

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_002463 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0002220 innate immune response activating cell surface receptor signaling pathway Biological Process
GO:0006952 defense response Biological Process
GO:0009626 plant-type hypersensitive response Biological Process
GO:0012501 programmed cell death Biological Process
GO:0016045 detection of bacterium Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:2000377 regulation of reactive oxygen species metabolic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT1G12220
ath:AT1G12280
ath:AT4G10780
ath:AT4G26090
ath:AT5G63020
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.622
Rank 1 · TkA01G458050 · TK1151
Cytoplasm0.170
Rank 2 · TkA01G458050 · TK1151
Nucleus0.136
Rank 3 · TkA01G458050 · TK1151
Endoplasmic reticulum0.101
Rank 4 · TkA01G458050 · TK1151
Plastid0.058
Rank 5 · TkA01G458050 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24883NPHP3_N40-98 aa
PF07693KAP_NTPase78-101 aa
PF14389Lzipper-MIP179-147 aa
PF24883NPHP3_N137-174 aa
PF00931NB-ARC210-374 aa
PF07693KAP_NTPase211-313 aa
PF01637ATPase_2212-266 aa
PF05621TniB212-310 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA01G458050PF24883NPHP3_N40980.06314.2
TkA01G458050PF07693KAP_NTPase781013.5e-0523.8
TkA01G458050PF14389Lzipper-MIP1791470.212.8
TkA01G458050PF24883NPHP3_N1371740.06314.2
TkA01G458050PF00931NB-ARC2103741.9e-48165.0
TkA01G458050PF07693KAP_NTPase2113133.5e-0523.8
TkA01G458050PF01637ATPase_22122660.001319.3
TkA01G458050PF05621TniB2123100.07613.2
TkA01G458050PF12775AAA_72123120.2811.4
TkA01G458050PF05970PIF12132640.1312.6
TkA01G458050PF13604AAA_302182640.2711.7
TkA01G458050PF25199nSTAND_NTPase52203030.05314.1
TkA01G458050PF24883NPHP3_N2232570.06314.2
TkA01G458050PF25201nSTAND62242870.00517.6
TkA01G458050PF00005ABC_tran2262490.09614.0
TkA01G458050PF13191AAA_162272710.01416.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q42484Arabidopsis thalianasp|Q42484|RPS2_ARATH Disease resistance protein RPS248.600%Swiss-ProtMedium
O64973Arabidopsis thalianasp|O64973|RPS5_ARATH Disease resistance protein RPS533.900%Swiss-ProtMedium
O82484Arabidopsis thalianasp|O82484|DRL23_ARATH Putative disease resistance protein At4g1078034.200%Swiss-ProtMedium
Q9LMP6Arabidopsis thalianasp|Q9LMP6|DRL3_ARATH Probable disease resistance protein At1g1589041.400%Swiss-ProtMedium
P60838Arabidopsis thalianasp|P60838|SUMM2_ARATH Disease resistance protein SUMM235.500%Swiss-ProtMedium

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