Gene Card
Gene overview
cDNA / CDS / Protein Sequences
691 bp · TkA01G073490|TK1151|cDNA
CTGAAGTCAATTACACAACTATTCTATGGTAGTCGGAGCAGACAGTTGAAGGGACTGCAATACAGACAGAGAAATGCCTCCACAACAACCGTGCCGGAACTTCCAGCGTGGATACTGTAAATATGGCGAACACTGCAAGTTTCTTCATGGAAATCAGCAGCAAGCAAAACCGAATCCTTTTGGATTTGGCTCACAAAACGCTACACAATCTCCGCGTACTGATCCCCAACCTCAAAAACCCAACCCGTTTGGGTTCGGTG...
618 bp · TkA01G073490|TK1151|CDS
ATGCCTCCACAACAACCGTGCCGGAACTTCCAGCGTGGATACTGTAAATATGGCGAACACTGCAAGTTTCTTCATGGAAATCAGCAGCAAGCAAAACCGAATCCTTTTGGATTTGGCTCACAAAACGCTACACAATCTCCGCGTACTGATCCCCAACCTCAAAAACCCAACCCGTTTGGGTTCGGTGTTCAGAACAACTCGCAGACTGGATCTAAACCTAATCAATTCAAGCCTGGTGAAAATAAATGGAGCCGATTTTC...
Protein
Download Protein FASTA206 aa · TkA01G073490|TK1151|PROTEIN
MPPQQPCRNFQRGYCKYGEHCKFLHGNQQQAKPNPFGFGSQNATQSPRTDPQPQKPNPFGFGVQNNSQTGSKPNQFKPGENKWSRFSPINNANPPAPQKQDNQANHVCTDSESCKRQINEDYQHEKPLWKLTCYGHCKYGPCDIIGDISIEELRAAAYDDAKRGMNIQTIVEKERSLVNSKLIEFENLLRNPYIKHLHKIQLLLPK
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA01G073490 |
|---|---|
| TK1151 ID | TkA01G073490 |
| OH-1004 ID | LXL04_003005 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.000 |
| Protein coverage (%) | TK1151 93.689 / OH-1004 52.877Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA01G073490 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:18837482-18838835 (-) | ||||||||||||
| Description | Similar to CG1: Zinc finger CCCH domain-containing protein 16 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
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| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0006351 DNA-templated transcription Biological Process GO:0009742 brassinosteroid mediated signaling pathway Biological Process GO:0015031 protein transport Biological Process GO:0016567 protein ubiquitination Biological Process GO:0051028 mRNA transport Biological Process GO:1900458 negative regulation of brassinosteroid mediated signaling pathway Biological Process GO:0005634 nucleus Cellular Component GO:0005635 nuclear envelope Cellular Component GO:0005643 nuclear pore Cellular Component GO:0005737 cytoplasm Cellular Component GO:0003677 DNA binding Molecular Function GO:0008270 zinc ion binding Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G75340 dosa:Os06g0704300 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF25586zf-CCCH_PAN34-27 aaPF00642zf-CCCH5-26 aaPF18044zf-CCCH_46-25 aaPF14608zf-CCCH_26-26 aaPF16131Torus6-26 aaPF18345zf_CCCH_47-25 aaPF25585zf-CCCH_DUS3L7-25 aaPF25427zf-CCCH_UNK11-30 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA01G073490 | PF25586 | zf-CCCH_PAN3 | 4 | 27 | 1.2 | 9.6 |
| TkA01G073490 | PF00642 | zf-CCCH | 5 | 26 | 3.1e-08 | 34.1 |
| TkA01G073490 | PF18044 | zf-CCCH_4 | 6 | 25 | 5.4e-06 | 26.8 |
| TkA01G073490 | PF14608 | zf-CCCH_2 | 6 | 26 | 0.0013 | 19.9 |
| TkA01G073490 | PF16131 | Torus | 6 | 26 | 0.0085 | 17.4 |
| TkA01G073490 | PF18345 | zf_CCCH_4 | 7 | 25 | 2.5e-06 | 28.1 |
| TkA01G073490 | PF25585 | zf-CCCH_DUS3L | 7 | 25 | 0.021 | 15.5 |
| TkA01G073490 | PF25427 | zf-CCCH_UNK | 11 | 30 | 0.017 | 15.7 |
| TkA01G073490 | PF00642 | zf-CCCH | 106 | 116 | 3.1e-08 | 34.1 |
| TkA01G073490 | PF18345 | zf_CCCH_4 | 108 | 115 | 2.5e-06 | 28.1 |
| TkA01G073490 | PF14608 | zf-CCCH_2 | 108 | 115 | 0.0013 | 19.9 |
| TkA01G073490 | PF27634 | Amo1_N | 113 | 177 | 9.4e-08 | 33.2 |
| TkA01G073490 | PF16131 | Torus | 114 | 114 | 0.0085 | 17.4 |
| TkA01G073490 | PF25585 | zf-CCCH_DUS3L | 128 | 142 | 0.021 | 15.5 |
| TkA01G073490 | PF25586 | zf-CCCH_PAN3 | 132 | 139 | 1.2 | 9.6 |
| TkA01G073490 | PF00642 | zf-CCCH | 134 | 141 | 3.1e-08 | 34.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.