Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2130 bp · LXL04_030234|LXL04_030234|OH1004|cDNA
ATGACCTCGTTAGCTGACCTAAATAATTCAATCAACCTTCTTATAGAAAAAATTGAAGGACTAATCATAGACATTGACGCCATAGTCAATAAATATGTAACTACTGAAGAATTAGAAGTTGCATCTGCAAAAATAATTAATACAATTATTAAAGAGTTATCTGAAAAGATTGACTCCTGCCCTTGtaataaagaaattcttgaaaaCATCAAGACTATCTCTATTGTAGAACAAAACGCCAAACCTGGAAAATATTCGGG...
2130 bp · LXL04_030234|LXL04_030234|OH1004|CDS
ATGACCTCGTTAGCTGACCTAAATAATTCAATCAACCTTCTTATAGAAAAAATTGAAGGACTAATCATAGACATTGACGCCATAGTCAATAAATATGTAACTACTGAAGAATTAGAAGTTGCATCTGCAAAAATAATTAATACAATTATTAAAGAGTTATCTGAAAAGATTGACTCCTGCCCTTGTAATAAAGAAATTCTTGAAAACATCAAGACTATCTCTATTGTAGAACAAAACGCCAAACCTGGAAAATATTCGGG...
Protein
Download Protein FASTA709 aa · LXL04_030234|LXL04_030234|OH1004|PROTEIN
MTSLADLNNSINLLIEKIEGLIIDIDAIVNKYVTTEELEVASAKIINTIIKELSEKIDSCPCNKEILENIKTISIVEQNAKPGKYSGLKRYSPPNPSIGNPELESQLLTTFTSPDGLFQWKVLPFGLKQAPSIFQRHMQNALRGFESFCTVYVDDIIVFSKNEQDHYVHVTQVKLKKDVIWNWTNTDTDYIKKIKKVLINFPKLYLPNIEDSLIIETDASDEFWGGDLKAKNSKNEEQICRYTSGSFKAAEKNYHSNEKE...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_030234 |
|---|---|
| TK1151 ID | TkA05G223940 |
| OH-1004 ID | LXL04_030234 |
| Relationship / confidence | Multi Candidate From Tk1151 / Complex relationship |
| Protein identity (%) | 50.100 |
| Protein coverage (%) | TK1151 51.139 / OH-1004 84.767Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_030234 |
|---|---|
| Location | Chr06:111895669-111899057 (-) |
| Description | Similar to ORF V: Enzymatic polyprotein (Figwort mosaic virus (strain DxS) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006508 proteolysis Biological Process GO:0030430 host cell cytoplasm Cellular Component GO:0003964 RNA-directed DNA polymerase activity Molecular Function GO:0004190 aspartic-type endopeptidase activity Molecular Function GO:0004519 endonuclease activity Molecular Function |
| KEGG gene cross-reference | vg:935429 vg:940156 vg:940158 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF03310.19Cauli_DNA-bind10-105 aaPF00078.33RVT_1106-174 aaPF17919.8RT_RNaseH_2183-281 aaPF17917.8RT_RNaseH210-316 aaPF31029.1Cauli_VI_C484-607 aaPF31029.1Cauli_VI_C609-674 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_030234 | PF03310.19 | Cauli_DNA-bind | 10 | 105 | 8.9e-14 | 52.4 |
| LXL04_030234 | PF00078.33 | RVT_1 | 106 | 174 | 4e-15 | 56.9 |
| LXL04_030234 | PF17919.8 | RT_RNaseH_2 | 183 | 281 | 2.6e-21 | 76.3 |
| LXL04_030234 | PF17917.8 | RT_RNaseH | 210 | 316 | 4.3e-25 | 88.6 |
| LXL04_030234 | PF31029.1 | Cauli_VI_C | 484 | 607 | 5.4e-49 | 167.3 |
| LXL04_030234 | PF31029.1 | Cauli_VI_C | 609 | 674 | 5.4e-49 | 167.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.