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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA05G223940
Reference: TK1151 Chr: Chr05 Coordinates: 56071595-56085259 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

4086 bp · TkA05G223940|TK1151|cDNA

ATGATGTCGTTAGCCGATTTAAATAATTCGATCAAACTTCTTACTGAAAAAATTGAAGGATTAAGCATAGAAGTTGACGCCTTAGTCAATAAATATGTTACCGTTGATGAATTAGAAATTGCTGCTGCAAAAATTATTGATAATATCATTAAGGAATTATCTGAAAAGATTAACTCTAGTAATAAAGATATTCTAGACACTGTTAGAAATATCAAAATTACAAACAATACTTCTACCTCTGAGGATAGAAGAAGTTATAA...

CDS

Download CDS FASTA

4086 bp · TkA05G223940|TK1151|CDS

ATGATGTCGTTAGCCGATTTAAATAATTCGATCAAACTTCTTACTGAAAAAATTGAAGGATTAAGCATAGAAGTTGACGCCTTAGTCAATAAATATGTTACCGTTGATGAATTAGAAATTGCTGCTGCAAAAATTATTGATAATATCATTAAGGAATTATCTGAAAAGATTAACTCTAGTAATAAAGATATTCTAGACACTGTTAGAAATATCAAAATTACAAACAATACTTCTACCTCTGAGGATAGAAGAAGTTATAA...

Protein

Download Protein FASTA

1361 aa · TkA05G223940|TK1151|PROTEIN

MMSLADLNNSIKLLTEKIEGLSIEVDALVNKYVTVDELEIAAAKIIDNIIKELSEKINSSNKDILDTVRNIKITNNTSTSEDRRSYKDNEKPEPSHRYRKNNNYEFKMPMHKGIPDTTADKTPIKIGILNLDCITDMQVKEEMIKRWVTEISLIIQTNEDDFTTAKKVLLLIEHKTSGNVQNFIKNMIWEDVALALEPVDFLDAINSLLYTFFLGIDYVSHRLQESEIKIAEAKQKMTKLQIHNIGAFDEFCCRYEKYLW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA05G223940
TK1151 IDTkA05G223940
OH-1004 IDLXL04_030234
Relationship / confidenceMulti Candidate From Tk1151 / Complex relationship
Protein identity (%)50.100
Protein coverage (%)TK1151 51.139 / OH-1004 84.767
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA05G223940
LocationChr05:56071595-56085259 (+)
DescriptionSimilar to ORF V: Enzymatic polyprotein (Figwort mosaic virus (strain DxS)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_030234 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006508 proteolysis Biological Process
GO:0030430 host cell cytoplasm Cellular Component
GO:0003964 RNA-directed DNA polymerase activity Molecular Function
GO:0004190 aspartic-type endopeptidase activity Molecular Function
GO:0004519 endonuclease activity Molecular Function
KEGG gene cross-reference
vg:935429
vg:940156
vg:940158
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.589
Rank 1 · TkA05G223940 · TK1151
Nucleus0.338
Rank 2 · TkA05G223940 · TK1151
Mitochondrion0.089
Rank 3 · TkA05G223940 · TK1151
Cell membrane0.073
Rank 4 · TkA05G223940 · TK1151
Endoplasmic reticulum0.037
Rank 5 · TkA05G223940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24531ANC1_spectrin8-63 aa
PF10522RII_binding_136-52 aa
PF21024Peptidase_A3B114-165 aa
PF30863PRO_PEG10-RTL1177-201 aa
PF17919RT_RNaseH_2216-232 aa
PF22909Caulimovir_coat_dom232-337 aa
PF02160Peptidase_A3393-565 aa
PF21024Peptidase_A3B398-449 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA05G223940PF24531ANC1_spectrin8635.38.2
TkA05G223940PF10522RII_binding_136520.04614.7
TkA05G223940PF21024Peptidase_A3B1141650.009217.5
TkA05G223940PF30863PRO_PEG10-RTL11772010.09213.9
TkA05G223940PF17919RT_RNaseH_22162328.5e-2174.6
TkA05G223940PF22909Caulimovir_coat_dom2323372.7e-0628.4
TkA05G223940PF02160Peptidase_A33935656.1e-42144.2
TkA05G223940PF21024Peptidase_A3B3984490.009217.5
TkA05G223940PF30863PRO_PEG10-RTL13994860.09213.9
TkA05G223940PF08284RVP_24264740.04714.2
TkA05G223940PF31029Cauli_VI_C5335643e-65220.5
TkA05G223940PF24531ANC1_spectrin5455825.38.2
TkA05G223940PF24531ANC1_spectrin6797075.38.2
TkA05G223940PF17919RT_RNaseH_27268258.5e-2174.6
TkA05G223940PF17917RT_RNaseH7538592.3e-2383.1
TkA05G223940PF01693Cauli_VI100410430.01916.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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