Gene Card
Gene overview
cDNA / CDS / Protein Sequences
522 bp · LXL04_028873|LXL04_028873|OH1004|cDNA
ATGTGTCTTCTTATTTTGCTTCGACGGTATTTTCTTTCCAGTTCCTTCCACTTACACCTCCGtcttaatttcattttctttacATCTCGTGCACTTATGAACTGTCAACTAATTCTGATTTTGAAGggttccttcttcttcttctccacgTTCCAGAACTGCTATGCGGTTGGAACTGTTGTGCGGTTGGAGATCGAAGCTTCTTCAGTTGTTAATAGGCTCGCTTCTTCGTTTACATCGTCATCTATCTATCAGACTAT...
522 bp · LXL04_028873|LXL04_028873|OH1004|CDS
ATGTGTCTTCTTATTTTGCTTCGACGGTATTTTCTTTCCAGTTCCTTCCACTTACACCTCCGTCTTAATTTCATTTTCTTTACATCTCGTGCACTTATGAACTGTCAACTAATTCTGATTTTGAAGGGTTCCTTCTTCTTCTTCTCCACGTTCCAGAACTGCTATGCGGTTGGAACTGTTGTGCGGTTGGAGATCGAAGCTTCTTCAGTTGTTAATAGGCTCGCTTCTTCGTTTACATCGTCATCTATCTATCAGACTAT...
Protein
Download Protein FASTA173 aa · LXL04_028873|LXL04_028873|OH1004|PROTEIN
MCLLILLRRYFLSSSFHLHLRLNFIFFTSRALMNCQLILILKGSFFFFSTFQNCYAVGTVVRLEIEASSVVNRLASSFTSSSIYQTITQVSVVPYSRFNYRHMANTLSLYRIVKQVGIPDERIILMLADDMACNSRNKYLAQVFNNENHWLNLYGDNVEVDYRGYEVTVENLP
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_028873 |
|---|---|
| TK1151 ID | TkA07G237700 |
| OH-1004 ID | LXL04_028873 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 96.500 |
| Protein coverage (%) | TK1151 85.821 / OH-1004 66.474Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_028873 |
|---|---|
| Location | Chr06:72389497-72390589 (-) |
| Description | Similar to PIG-K: Putative GPI-anchor transamidase |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006506 GPI anchor biosynthetic process Biological Process GO:0006508 proteolysis Biological Process GO:0016255 attachment of GPI anchor to protein Biological Process GO:0180046 GPI anchored protein biosynthesis Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0042765 GPI-anchor transamidase complex Cellular Component GO:0003923 GPI-anchor transamidase activity Molecular Function GO:0046872 metal ion binding Molecular Function |
| KEGG gene cross-reference | dme:Dmel_CG4406 hsa:10026 mmu:329777 pon:100169743 sce:YDR331W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01650.24Peptidase_C1399-171 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_028873 | PF01650.24 | Peptidase_C13 | 99 | 171 | 3.2e-12 | 47.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.