TkA07G237700 | RubberDandelionOmics

Gene overview

TkA07G237700

Reference: TK1151 Chr: Chr07 Coordinates: 59459107-59460451 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

673 bp · TkA07G237700|TK1151|cDNA

ATTTTTCCCTTCCTTGACATCTGTCTGTTTTGCTTTGTATATTACCGGATCAGGGGGGATCGAATCAGAGTTTCCTTAGGTAGCCACCGCTTTGATGTGTCTTCTTATTTTGCTTCGACGGGTTCCTTCTTCTTCTTCTCCACGTTCCAGAACTGCTATGCGGTTGGAGATCGAAGCTTCTTCAGTTGTTAATAGGCTCGCTTCTTTGTTTACATCGTCATCTATCTATCAGACTATCACCCAGGTGTCGGTCGTTCCTT...

CDS

Download CDS FASTA

405 bp · TkA07G237700|TK1151|CDS

ATGTGTCTTCTTATTTTGCTTCGACGGGTTCCTTCTTCTTCTTCTCCACGTTCCAGAACTGCTATGCGGTTGGAGATCGAAGCTTCTTCAGTTGTTAATAGGCTCGCTTCTTTGTTTACATCGTCATCTATCTATCAGACTATCACCCAGGTGTCGGTCGTTCCTTACTCTAGGTTTAATTATCGGCATATGGCAAACACTTTATCCTTGTACAGGATTGTGAAACAAGTAGGAATACCTGATGAAAGAATCATCCTTAT...

Protein

Download Protein FASTA

134 aa · TkA07G237700|TK1151|PROTEIN

MCLLILLRRVPSSSSPRSRTAMRLEIEASSVVNRLASLFTSSSIYQTITQVSVVPYSRFNYRHMANTLSLYRIVKQVGIPDERIILMLADDMACNSRNKYPAQVFNNENHWLNLYGDNVEVDYRGYEVTVENLP

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA07G237700`
TK1151 ID	TkA07G237700
OH-1004 ID	LXL04_028873
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	96.500
Protein coverage (%)	TK1151 85.821 / OH-1004 66.474 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA07G237700`
Location	Chr07:59459107-59460451 (+)
Description	Similar to PIG-K: Putative GPI-anchor transamidase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_028873` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0006506 GPI anchor biosynthetic process Biological Process GO:0006508 proteolysis Biological Process GO:0016255 attachment of GPI anchor to protein Biological Process GO:0180046 GPI anchored protein biosynthesis Biological Process GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0016020 membrane Cellular Component GO:0042765 GPI-anchor transamidase complex Cellular Component GO:0003923 GPI-anchor transamidase activity Molecular Function GO:0046872 metal ion binding Molecular Function
KEGG gene cross-reference	dme:Dmel_CG4406 hsa:10026 mmu:329777 pon:100169743 sce:YDR331W These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.244

Rank 1 · TkA07G237700 · TK1151

Nucleus0.238

Rank 2 · TkA07G237700 · TK1151

Endoplasmic reticulum0.200

Rank 3 · TkA07G237700 · TK1151

Cell membrane0.136

Rank 4 · TkA07G237700 · TK1151

Extracellular0.125

Rank 5 · TkA07G237700 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01650Peptidase_C1360-132 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA07G237700	`PF01650`	Peptidase_C13	60	132	2.7e-13	50.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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