LXL04_022051 | RubberDandelionOmics

Gene overview

LXL04_022051

Reference: OH-1004 Chr: Chr04 Coordinates: 144049905-144051173 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1269 bp · LXL04_022051|LXL04_022051|OH1004|cDNA

ATGTGGATTTTCTGTAATTGGGGGTCGAAGAAGATGACAGCGGAGGTACTTCCATCAACAACGCGAAGTGCAGGCTCGACATCTCATATGTCATCATCATCAAGGAGGACGTCTAAGTCAGATCACTCTCCTCGCGGATCTTCTTTTGTATCTTCTTCGGTCGCGGCGTCTGGTTCGAACAATACCAACAGTTACAACAACGACTCATGGAAATCGTCTGTTTCTAGCCACAGCTCACTATCAAGCCTCCGAGATTCGTT...

CDS

Download CDS FASTA

1269 bp · LXL04_022051|LXL04_022051|OH1004|CDS

ATGTGGATTTTCTGTAATTGGGGGTCGAAGAAGATGACAGCGGAGGTACTTCCATCAACAACGCGAAGTGCAGGCTCGACATCTCATATGTCATCATCATCAAGGAGGACGTCTAAGTCAGATCACTCTCCTCGCGGATCTTCTTTTGTATCTTCTTCGGTCGCGGCGTCTGGTTCGAACAATACCAACAGTTACAACAACGACTCATGGAAATCGTCTGTTTCTAGCCACAGCTCACTATCAAGCCTCCGAGATTCGTT...

Protein

Download Protein FASTA

422 aa · LXL04_022051|LXL04_022051|OH1004|PROTEIN

MWIFCNWGSKKMTAEVLPSTTRSAGSTSHMSSSSRRTSKSDHSPRGSSFVSSSVAASGSNNTNSYNNDSWKSSVSSHSSLSSLRDSLPENPHLYDFKEIFTATNKFLSDKYSSTSSSTAWRCVIRGDDVIVIQRKFRRPIDAAELRDRLLVICRSHHSSLTKLRGASMSGGYIYLVYDYVKGANLADCLKNPKNPNFTILSDWMSRIQIAADIAQGLDYIHNSTGLEKKFIHNHIKSTSIIVTESSSLNAKICHFGTAEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_022051`
TK1151 ID	TkA05G443020
OH-1004 ID	LXL04_022051
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

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SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_022051

Location Chr04:144049905-144051173 (+)

Description Similar to LYK3: LysM domain receptor-like kinase 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g51940`	Putative Lysin motif (LysM) receptor kinase that may recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.	No verified direct reference in this release
`At2g33580`	May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.	No verified direct reference in this release
`At5g48740`	Probable LRR receptor-like serine/threonine-protein kinase At5g48740.	No verified direct reference in this release
`At1g15530`	Involved in resistance response to the pathogenic oomycetes Phytophthora infestans and Phytophthora capsici and to the pathogenic bacteria Pseudomonas syringae.	No verified direct reference in this release
`At3g21630`	Lysin motif (LysM) receptor kinase that functions as a cell surface receptor in chitin elicitor (chitooligosaccharides) signaling leading to innate immunity toward both biotic and abiotic stresses (e.g. tolerance to salinity, heavy-metal stresses, and Botrytis cinerea infection).	CERK1, a LysM receptor kinase, is essential for chitin elicitor signaling in Arabidopsis.2007 · DOI: 10.1073/pnas.0705147104 AvrPtoB targets the LysM receptor kinase CERK1 to promote bacterial virulence on plants.2009 · DOI: 10.1016/j.cub.2009.01.054 The lysin motif receptor-like kinase (LysM-RLK) CERK1 is a major chitin-binding protein in Arabidopsis thaliana and subject to chitin-induced phosphorylation.2010 · DOI: 10.1074/jbc.m110.116657 Arabidopsis lysin-motif proteins LYM1 LYM3 CERK1 mediate bacterial peptidoglycan sensing and immunity to bacterial infection.2011 · DOI: 10.1073/pnas.1112862108 The LysM receptor-like kinase LysM RLK1 is required to activate defense and abiotic-stress responses induced by overexpression of fungal chitinases in Arabidopsis plants.2012 · DOI: 10.1093/mp/sss021 Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants.2012 · DOI: 10.1093/pcp/pcs113 Selective regulation of the chitin-induced defense response by the Arabidopsis receptor-like cytoplasmic kinase PBL27.2014 · DOI: 10.1111/tpj.12535

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022051 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0002752 cell surface pattern recognition receptor signaling pathway Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010200 response to chitin Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0032491 detection of molecule of fungal origin Biological Process

GO:0032499 detection of peptidoglycan Biological Process

GO:0035556 intracellular signal transduction Biological Process

KEGG gene cross-reference

ath:AT1G15530

ath:AT1G51940

ath:AT2G33580

ath:AT3G21630

ath:AT5G48740

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.652

Rank 1 · LXL04_022051 · OH-1004

Nucleus0.276

Rank 2 · LXL04_022051 · OH-1004

Cytoplasm0.253

Rank 3 · LXL04_022051 · OH-1004

Endoplasmic reticulum0.038

Rank 4 · LXL04_022051 · OH-1004

Golgi apparatus0.024

Rank 5 · LXL04_022051 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714.24PK_Tyr_Ser-Thr143-390 aa

PF00069.32Pkinase146-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_022051	`PF07714.24`	PK_Tyr_Ser-Thr	143	390	9.7e-27	94.6
LXL04_022051	`PF00069.32`	Pkinase	146	387	1.2e-26	94.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IB81`	Arabidopsis thaliana	LysM domain receptor-like kinase 3	31.065%	Swiss-Prot	moderate database homology
`O22808`	Arabidopsis thaliana	Protein LYK5	30.588%	Swiss-Prot	moderate database homology
`C0LGV0`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At5g48740	29.967%	Swiss-Prot	weak database homology
`Q9M9E0`	Arabidopsis thaliana	L-type lectin-domain containing receptor kinase S.1	30.000%	Swiss-Prot	moderate database homology
`A8R7E6`	Arabidopsis thaliana	Chitin elicitor receptor kinase 1	30.476%	Swiss-Prot	moderate database homology

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