TkA05G443020 | RubberDandelionOmics

Gene overview

TkA05G443020

Reference: TK1151 Chr: Chr05 Coordinates: 110686390-110688155 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1687 bp · TkA05G443020|TK1151|cDNA

TCGACATCACATAAAGTTAAATATCACTTTATCAAGCAGAAATAAAACTAAATTTGTTGTATATGAATAATTTTTTGTATATAAAACCATCAAGATCAATAAAATCAACCCATTACATTCGGCCTTCCTATTTTGCCCATTGATTCCTACGTTCCTCGAAGGTTGGTGGATAGCGACCTCACTGAATCAAGACGTTAACTCAATTTGCACCGCTATCTTTCACGACTCGATGTTTGGTTTGATTTCTTCTAAATTATGTG...

CDS

Download CDS FASTA

1269 bp · TkA05G443020|TK1151|CDS

ATGTGGATTTTCTGTAATTGGGGGTCGAAGAAGATGACAGCGGAGGTACTTCCATCAACAACGCGAAGTGCAGGCTCGACATCTCATATGTCATCATCATCAAGGAGGACGTCTAAGTCAGATCACTCTCCTCGCGGATCTTCTTTTGTATCTTCTTCGGTCGCGGCGTCTGGTTCGAACAATACCAACAGTTACAACAACGACTCATGGAAATCGTCTGTTTCTAGCCACAGCTCACTATCAAGCCTCCGAGATTCGTT...

Protein

Download Protein FASTA

422 aa · TkA05G443020|TK1151|PROTEIN

MWIFCNWGSKKMTAEVLPSTTRSAGSTSHMSSSSRRTSKSDHSPRGSSFVSSSVAASGSNNTNSYNNDSWKSSVSSHSSLSSLRDSLPENPHLYDFKEIFTATNKFLSDKYSSTSSSTAWRCVIRGDDVIVIQRKFRRPIDAAELRDRLLVICRSHHSSLTKLRGASMSGGYIYLVYDYVKGANLADCLKNPKNPNFTILSDWMSRIQIAADIAQGLDYIHNSTGLEKKFIHNHIKSTSIIVTESSSLNAKICHFGTAEL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA05G443020`
TK1151 ID	TkA05G443020
OH-1004 ID	LXL04_022051
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA05G443020

Location Chr05:110686390-110688155 (+)

Description Similar to LYK3: LysM domain receptor-like kinase 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g51940`	Putative Lysin motif (LysM) receptor kinase that may recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.	No verified direct reference in this release
`At2g33580`	May recognize microbe-derived N-acetylglucosamine (NAG)-containing ligands.	No verified direct reference in this release
`At1g01540`	Probable serine/threonine-protein kinase At1g01540.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0538300`	Lysin motif (LysM) receptor kinase required as a cell surface receptor for chitin elicitor (chitooligosaccharides) signaling leading to innate immunity in response to biotic stresses.	Two LysM receptor molecules, CEBiP and OsCERK1, cooperatively regulate chitin elicitor signaling in rice.2010 · DOI: 10.1111/j.1365-313x.2010.04324.x Functional characterization of CEBiP and CERK1 homologs in arabidopsis and rice reveals the presence of different chitin receptor systems in plants.2012 · DOI: 10.1093/pcp/pcs113 A receptor-like cytoplasmic kinase targeted by a plant pathogen effector is directly phosphorylated by the chitin receptor and mediates rice immunity.2013 · DOI: 10.1016/j.chom.2013.02.007 Targeted gene disruption of OsCERK1 reveals its indispensable role in chitin perception and involvement in the peptidoglycan response and immunity in rice.2014 · DOI: 10.1094/mpmi-03-14-0068-r OsCERK1 and OsRLCK176 play important roles in peptidoglycan and chitin signaling in rice innate immunity.2014 · DOI: 10.1111/tpj.12710

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_022051 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002229 defense response to oomycetes Biological Process

GO:0002752 cell surface pattern recognition receptor signaling pathway Biological Process

GO:0006468 protein phosphorylation Biological Process

GO:0006952 defense response Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process

GO:0010200 response to chitin Biological Process

GO:0031348 negative regulation of defense response Biological Process

GO:0032491 detection of molecule of fungal origin Biological Process

GO:0032499 detection of peptidoglycan Biological Process

GO:0035556 intracellular signal transduction Biological Process

KEGG gene cross-reference

ath:AT1G15530

ath:AT1G51940

ath:AT2G33580

ath:AT3G21630

ath:AT5G48740

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.652

Rank 1 · TkA05G443020 · TK1151

Nucleus0.276

Rank 2 · TkA05G443020 · TK1151

Cytoplasm0.253

Rank 3 · TkA05G443020 · TK1151

Endoplasmic reticulum0.038

Rank 4 · TkA05G443020 · TK1151

Golgi apparatus0.024

Rank 5 · TkA05G443020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr143-390 aa

PF00069Pkinase146-387 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA05G443020	`PF07714`	PK_Tyr_Ser-Thr	143	390	9.7e-27	94.6
TkA05G443020	`PF00069`	Pkinase	146	387	1.2e-26	94.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IB81`	Arabidopsis thaliana	sp\|F4IB81\|LYK3_ARATH LysM domain receptor-like kinase 3	31.800%	Swiss-Prot	Medium
`O22808`	Arabidopsis thaliana	sp\|O22808\|LYK5_ARATH Protein LYK5	30.600%	Swiss-Prot	Medium
`Q3EDL4`	Arabidopsis thaliana	sp\|Q3EDL4\|Y1154_ARATH Probable serine/threonine-protein kinase At1g01540	27.300%	Swiss-Prot	Low
`A0A0P0XII1`	Oryza sativa subsp. japonica	sp\|A0A0P0XII1\|CERK1_ORYSJ Chitin elicitor receptor kinase 1	30.800%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card