Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1695 bp · LXL04_000625|LXL04_000625|OH1004|cDNA
ATGCCGGCTCGAGCAAGACGAACGTTGTTCCCGGAGGTAGTTATTGAGAGGGACTCTGACACCGAGAAAAGTTCAGACGATGAAGAAGAGGTAGAAGACGACGTCGTTGAGTCAGATGATCAAGAAGAAGACGAAGTAGAGGTCGATGCGCGAAAAGTTAAAGAGGCTGAAGTTTCGTCTCCAGCCAATAAGAAGGGGAAGGCGCATATTACTATCAGTCTTAAGAAAGTCTGCAAGGTCTGTAAGAGAACGGGTCATCA...
1695 bp · LXL04_000625|LXL04_000625|OH1004|CDS
ATGCCGGCTCGAGCAAGACGAACGTTGTTCCCGGAGGTAGTTATTGAGAGGGACTCTGACACCGAGAAAAGTTCAGACGATGAAGAAGAGGTAGAAGACGACGTCGTTGAGTCAGATGATCAAGAAGAAGACGAAGTAGAGGTCGATGCGCGAAAAGTTAAAGAGGCTGAAGTTTCGTCTCCAGCCAATAAGAAGGGGAAGGCGCATATTACTATCAGTCTTAAGAAAGTCTGCAAGGTCTGTAAGAGAACGGGTCATCA...
Protein
Download Protein FASTA564 aa · LXL04_000625|LXL04_000625|OH1004|PROTEIN
MPARARRTLFPEVVIERDSDTEKSSDDEEEVEDDVVESDDQEEDEVEVDARKVKEAEVSSPANKKGKAHITISLKKVCKVCKRTGHQAGFQGPTYIDCPMKPCFLCKLPGHTTVDCPHRAAMEFGVIPASRKRTNNSLDYVFERQVRHRVPSIKPEFVIPDEVNCAVIRYHSRRVTCLEFHPTNNNILLSGDKKGQLGVWDFGKVHEKTVYSNIHTCLLNNMKFSPANDGTVYAASSDGTMSSTDLETGLSTPLLDLNPN...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | LXL04_000625 |
|---|---|
| TK1151 ID | TkA01G598790 |
| OH-1004 ID | LXL04_000625 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 92.730 / OH-1004 92.730Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | OH-1004 / GCA_047496595.1_OSU_TarKok_2.0 |
SNP / Indel variants and carrier samplesCRA009020 · OH-1004
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | LXL04_000625 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr01:11337750-11340312 (+) | ||||||||||||
| Description | Similar to DDB2: Protein DAMAGED DNA-BINDING 2 | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000209 protein polyubiquitination Biological Process GO:0006281 DNA repair Biological Process GO:0006289 nucleotide-excision repair Biological Process GO:0009411 response to UV Biological Process GO:0010224 response to UV-B Biological Process GO:0016567 protein ubiquitination Biological Process GO:0034644 cellular response to UV Biological Process GO:0051865 protein autoubiquitination Biological Process GO:0070914 UV-damage excision repair Biological Process GO:0005634 nucleus Cellular Component GO:0005654 nucleoplasm Cellular Component GO:0031464 Cul4A-RING E3 ubiquitin ligase complex Cellular Component | ||||||||||||
| KEGG gene cross-reference | ath:AT5G58760 bta:519357 dosa:Os01g0141700 gga:423185 osa:4325482 xtr:493565 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF24814.2WD40_Prp19165-249 aaPF23775.2Beta-prop_RIG_2nd166-235 aaPF25174.2Beta-prop_THOC3167-407 aaPF25173.2Beta-prop_WDR3_1st167-249 aaPF29630.1ASA1167-208 aaPF25171.2Beta-prop_WDR36-Utp21_1st170-228 aaPF23609.2Beta-prop_EIPR1171-241 aaPF24796.2WDR55173-387 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| LXL04_000625 | PF24814.2 | WD40_Prp19 | 165 | 249 | 2.6e-15 | 57.0 |
| LXL04_000625 | PF23775.2 | Beta-prop_RIG_2nd | 166 | 235 | 1.2e-11 | 45.3 |
| LXL04_000625 | PF25174.2 | Beta-prop_THOC3 | 167 | 407 | 2.6e-23 | 83.1 |
| LXL04_000625 | PF25173.2 | Beta-prop_WDR3_1st | 167 | 249 | 4.4e-13 | 50.0 |
| LXL04_000625 | PF29630.1 | ASA1 | 167 | 208 | 4.6e-07 | 29.8 |
| LXL04_000625 | PF25171.2 | Beta-prop_WDR36-Utp21_1st | 170 | 228 | 2.2e-08 | 34.6 |
| LXL04_000625 | PF23609.2 | Beta-prop_EIPR1 | 171 | 241 | 1.1e-14 | 55.3 |
| LXL04_000625 | PF24796.2 | WDR55 | 173 | 387 | 7.1e-09 | 35.9 |
| LXL04_000625 | PF24807.2 | WD40_CDC20-Fz | 277 | 391 | 2.9e-16 | 60.3 |
| LXL04_000625 | PF23775.2 | Beta-prop_RIG_2nd | 280 | 387 | 1.2e-11 | 45.3 |
| LXL04_000625 | PF23609.2 | Beta-prop_EIPR1 | 281 | 386 | 1.1e-14 | 55.3 |
| LXL04_000625 | PF25174.2 | Beta-prop_THOC3 | 310 | 389 | 2.6e-23 | 83.1 |
| LXL04_000625 | PF24814.2 | WD40_Prp19 | 315 | 388 | 2.6e-15 | 57.0 |
| LXL04_000625 | PF25175.2 | Beta-prop_WDR5 | 325 | 391 | 5.6e-15 | 56.1 |
| LXL04_000625 | PF25173.2 | Beta-prop_WDR3_1st | 327 | 387 | 4.4e-13 | 50.0 |
| LXL04_000625 | PF23381.2 | Beta-prop_IFT122_1st | 328 | 387 | 1.6e-13 | 51.3 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.