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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG097110
Reference: TK1151 Chr: ChrUn Coordinates: 27429863-27431548 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1641 bp · TkAUNG097110|TK1151|cDNA

ATGAAGACCATCTTAAGACGAATCATCATTCCTTACGCCAAATTCTCTCCGGTAATCAATAATAACCTTCCTCGCTTTCATAATCACATTAATACGGCGGCAGAATCACCACACTCTGCGGCGGCGCAGGAAGAGGAAGACAAGACAGCAGAATCAATCACCTGCATATGCAAATCTTTTTCAAATAATCTCAACTGGGAAATCCTTAATCAGAAGTTTATGTTTGTCGATCTCCGAAACTCGGCTACAATCAACAGAGT...

CDS

Download CDS FASTA

1641 bp · TkAUNG097110|TK1151|CDS

ATGAAGACCATCTTAAGACGAATCATCATTCCTTACGCCAAATTCTCTCCGGTAATCAATAATAACCTTCCTCGCTTTCATAATCACATTAATACGGCGGCAGAATCACCACACTCTGCGGCGGCGCAGGAAGAGGAAGACAAGACAGCAGAATCAATCACCTGCATATGCAAATCTTTTTCAAATAATCTCAACTGGGAAATCCTTAATCAGAAGTTTATGTTTGTCGATCTCCGAAACTCGGCTACAATCAACAGAGT...

Protein

Download Protein FASTA

546 aa · TkAUNG097110|TK1151|PROTEIN

MKTILRRIIIPYAKFSPVINNNLPRFHNHINTAAESPHSAAAQEEEDKTAESITCICKSFSNNLNWEILNQKFMFVDLRNSATINRVLIQLKEPLDAKKALSFFHWSAHLANIKHPTNTYALLIHILVNAKLIRDASALIESVLVRSVKGNFNNPSGDGSSSVLSFIDSLMSSYEVVNSSPFVFDLTIQICAKLRMIDEAIDACFCLGEHGIRLTDITYNTLLRVIQKSDKTKLVWKVYEQMIKQRTYSNEKTTGIMIDA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG097110
TK1151 IDTkAUNG097110
OH-1004 IDLXL04_014035
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)96.800
Protein coverage (%)TK1151 100.000 / OH-1004 87.247
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG097110
LocationChrUn:27429863-27431548 (-)
DescriptionSimilar to At1g66345: Pentatricopeptide repeat-containing protein At1g66345, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g66345 Pentatricopeptide repeat-containing protein At1g66345, mitochondrial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_014035 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000373 Group II intron splicing Biological Process
GO:0000963 mitochondrial RNA processing Biological Process
GO:0032981 mitochondrial respiratory chain complex I assembly Biological Process
GO:0090615 mitochondrial mRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
GO:0036002 pre-mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT1G66345
ath:AT2G02150
ath:AT5G39710
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.808
Rank 1 · TkAUNG097110 · TK1151
Plastid0.101
Rank 2 · TkAUNG097110 · TK1151
Nucleus0.056
Rank 3 · TkAUNG097110 · TK1151
Cytoplasm0.029
Rank 4 · TkAUNG097110 · TK1151
Cell membrane0.010
Rank 5 · TkAUNG097110 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF29070MSC6_N20-41 aa
PF17177PPR_long96-133 aa
PF23276TPR_2496-142 aa
PF13812PPR_3112-141 aa
PF29070MSC6_N114-140 aa
PF13041PPR_2119-148 aa
PF01535PPR119-142 aa
PF12854PPR_1119-139 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG097110PF29070MSC6_N20412.8e-0834.0
TkAUNG097110PF17177PPR_long961333.6e-1246.8
TkAUNG097110PF23276TPR_24961426.4e-1039.8
TkAUNG097110PF13812PPR_31121414.3e-1865.9
TkAUNG097110PF29070MSC6_N1141402.8e-0834.0
TkAUNG097110PF13041PPR_21191481.3e-35121.9
TkAUNG097110PF01535PPR1191421.9e-30103.6
TkAUNG097110PF12854PPR_11191397.3e-1864.7
TkAUNG097110PF13428TPR_141191440.02615.9
TkAUNG097110PF14559TPR_191201430.003318.4
TkAUNG097110PF17177PPR_long1853083.6e-1246.8
TkAUNG097110PF13041PPR_21882021.3e-35121.9
TkAUNG097110PF01535PPR1882051.9e-30103.6
TkAUNG097110PF23276TPR_241882906.4e-1039.8
TkAUNG097110PF13812PPR_32102464.3e-1865.9
TkAUNG097110PF12854PPR_12112237.3e-1864.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q3ECH5Arabidopsis thalianasp|Q3ECH5|PP107_ARATH Pentatricopeptide repeat-containing protein At1g66345, mitochondrial45.200%Swiss-ProtLow

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