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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG092220
Reference: TK1151 Chr: ChrUn Coordinates: 26136754-26143237 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1443 bp · TkAUNG092220|TK1151|cDNA

TATGCAAAGGTGTGGGATTATGGTGGTGAACCGGCAATTTAGGGCAAACGTGTCAAAATAAATCGTTCTGGAATATGTGCGACTGTAGTGCGGATTTATAACGGGCCGATTTGCAGGTGAAGAACGTCGACTGGTGCACCATGAATCCCATAGCTACTAAGGTTGCTGTCATCGGTGCCGGAATTTCAGGAGCCGTGTGCGCTTCCAATCTGGCGAAGAATGGCATTTCAGTCACCATCTTCGAATCCGCCAGGGGCCCA...

CDS

Download CDS FASTA

1110 bp · TkAUNG092220|TK1151|CDS

ATGAATCCCATAGCTACTAAGGTTGCTGTCATCGGTGCCGGAATTTCAGGAGCCGTGTGCGCTTCCAATCTGGCGAAGAATGGCATTTCAGTCACCATCTTCGAATCCGCCAGGGGCCCAGGCGGTCGAATGTCTCGGAGAAGAGAAATTGCTGACGATGATAGGGAATTGTATTTTGACCACGGCGCACCTTATTTTACTTCAACAACCACCGACGTGGAGGAGATGATTAGGGGTTGGGAAGCCAGGGGTCTAGTTGC...

Protein

Download Protein FASTA

369 aa · TkAUNG092220|TK1151|PROTEIN

MNPIATKVAVIGAGISGAVCASNLAKNGISVTIFESARGPGGRMSRRREIADDDRELYFDHGAPYFTSTTTDVEEMIRGWEARGLVAEWKQNFGSFDFITKKFVNFEKEGLKRKYVGIPGMNSICRALCHEPGIESKFGVMVGRLEWLENEESWTLADVNGQDLGKFNGVVASDKSTFSQRFTKVTGKPPPLDLKMIPGLADMIEEVPVRPCFALMLAFENPLSSIPLKGFSIDNSQLLSWATCDSSKPGRSTSSERWVL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG092220
TK1151 IDTkAUNG092220
OH-1004 IDLXL04_016097
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 84.247
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG092220
LocationChrUn:26136754-26143237 (-)
DescriptionSimilar to PSPTO_1126: Renalase (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_016097 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0050660 flavin adenine dinucleotide binding Molecular Function
GO:0050661 NADP binding Molecular Function
GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor Molecular Function
GO:0051287 NAD binding Molecular Function
GO:0071949 FAD binding Molecular Function
KEGG gene cross-reference
psp:PSPPH_1014
pst:PSPTO_1126
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.328
Rank 1 · TkAUNG092220 · TK1151
Mitochondrion0.315
Rank 2 · TkAUNG092220 · TK1151
Nucleus0.197
Rank 3 · TkAUNG092220 · TK1151
Plastid0.173
Rank 4 · TkAUNG092220 · TK1151
Peroxisome0.107
Rank 5 · TkAUNG092220 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01946Thi45-43 aa
PF01494FAD_binding_36-38 aa
PF07991KARI_N6-33 aa
PF00743FMO-like6-44 aa
PF01262AlaDh_PNT_C6-36 aa
PF01266DAO7-45 aa
PF07992Pyr_redox_27-40 aa
PF00070Pyr_redox7-38 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG092220PF01946Thi45430.001218.8
TkAUNG092220PF01494FAD_binding_36380.001418.6
TkAUNG092220PF07991KARI_N6330.09812.9
TkAUNG092220PF00743FMO-like6440.310.2
TkAUNG092220PF01262AlaDh_PNT_C6360.4310.7
TkAUNG092220PF01266DAO7451.7e-0731.9
TkAUNG092220PF07992Pyr_redox_27400.0003121.0
TkAUNG092220PF00070Pyr_redox7380.0004821.3
TkAUNG092220PF03486HI0933_like7420.0005120.3
TkAUNG092220PF01134GIDA7360.002917.4
TkAUNG092220PF027373HCDH_N7370.006717.1
TkAUNG092220PF21799MurD-like_N7420.04914.6
TkAUNG092220PF03446NAD_binding_27360.05814.2
TkAUNG092220PF01210NAD_Gly3P_dh_N7390.1113.2
TkAUNG092220PF12831FAD_oxidored8540.0002221.4
TkAUNG092220PF00890FAD_binding_28380.006616.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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