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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG091870
Reference: TK1151 Chr: ChrUn Coordinates: 26006297-26012179 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3782 bp · TkAUNG091870|TK1151|cDNA

CTCTTATAGACTTATACTCTTATTGAATTATATTTCCCTTTCTCAAACGATGCATTTTGCATCTGGGAAAGAAACATTTACCTACTTTTTTTTTCTAGTTGGCATATATTAACTTTGCTTTGAAGATAGGATAGCATCCATTTGACTGTAACAGTAGCACGTGCTGAGTCACGTGCATCTCTGTCTCATCTTGACGGAACCAAACTAACGACGCCGAAGCATCACAGCGGACCGAGTTCACCCACTCACTCGCTGACTCA...

CDS

Download CDS FASTA

2139 bp · TkAUNG091870|TK1151|CDS

ATGGCTTCGACGGTGGCTCAACGAGCTGAACTCGCCAAGTTTTGTAGTTCTCGTGACTGGTCTAAAGCTATTCGCGTTCTCGATTCTCTCCTCTCTCAATCATGCGTTATTCAGGATATTTGTAATCGTGCGTACTGTTATAGTCAATTGGAGCTTCACAAACATGTGATTAAGGACTGTGACAAGGCTCTTCAGCTCGATCCTACGCTTCTTCAAGCCTATATCCTCAAAGGCCATGCGTATTCTGCATTGGGAAGAAA...

Protein

Download Protein FASTA

712 aa · TkAUNG091870|TK1151|PROTEIN

MASTVAQRAELAKFCSSRDWSKAIRVLDSLLSQSCVIQDICNRAYCYSQLELHKHVIKDCDKALQLDPTLLQAYILKGHAYSALGRKDDAVMVWEQGYEHAVHLSVDLKQVLELEELLTAAKQSMAEAKQLSEWSVSKPEPTNSVIKSSETFNNHTMSNLGYGPCGDSKEIESKQNDSSSNGNQQNGTHNISVDFGARSSSSSDNRNKSDLSTKISLVPSKSSDKSDMDSEQSNKGNKKFSVTRISKAKSINVDFRLSRG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG091870
TK1151 IDTkAUNG091870
OH-1004 IDLXL04_013599
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)87.400
Protein coverage (%)TK1151 93.539 / OH-1004 67.030
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG091870
LocationChrUn:26006297-26012179 (-)
DescriptionSimilar to SRFR1: Suppressor of RPS4-RLD 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At4g37460 Negative regulator of effector-triggered immunity associated with the EDS1 resistance pathway.
Two Arabidopsis srfr (suppressor of rps4-RLD) mutants exhibit avrRps4-specific disease resistance independent of RPS4.2004 · DOI: 10.1111/j.1365-313x.2004.02213.x
SRFR1, a suppressor of effector-triggered immunity, encodes a conserved tetratricopeptide repeat protein with similarity to transcriptional repressors.2009 · DOI: 10.1111/j.1365-313x.2008.03669.x
Resistance to the Pseudomonas syringae effector HopA1 is governed by the TIR-NBS-LRR protein RPS6 and is enhanced by mutations in SRFR1.2009 · DOI: 10.1104/pp.109.139238
Regulation of defense gene expression by Arabidopsis SRFR1.2009 · DOI: 10.4161/psb.4.2.7682
The Arabidopsis resistance-like gene SNC1 is activated by mutations in SRFR1 and contributes to resistance to the bacterial effector AvrRps4.2010 · DOI: 10.1371/journal.ppat.1001172
Pathogen effectors target Arabidopsis EDS1 and alter its interactions with immune regulators.2011 · DOI: 10.1126/science.1211592

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_013599 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006493 protein O-linked glycosylation Biological Process
GO:0009910 negative regulation of flower development Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0031348 negative regulation of defense response Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0045892 negative regulation of DNA-templated transcription Biological Process
GO:0046813 receptor-mediated virion attachment to host cell Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0016020 membrane Cellular Component
GO:0048471 perinuclear region of cytoplasm Cellular Component
GO:0016757 glycosyltransferase activity Molecular Function
KEGG gene cross-reference
ath:AT3G04240
ath:AT4G37460
hsa:79573
syn:slr0751
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.433
Rank 1 · TkAUNG091870 · TK1151
Cytoplasm0.417
Rank 2 · TkAUNG091870 · TK1151
Cell membrane0.092
Rank 3 · TkAUNG091870 · TK1151
Mitochondrion0.062
Rank 4 · TkAUNG091870 · TK1151
Endoplasmic reticulum0.060
Rank 5 · TkAUNG091870 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13176TPR_714-32 aa
PF13371TPR_916-73 aa
PF13428TPR_1417-33 aa
PF14853Fis1_TPR_C18-32 aa
PF14559TPR_1919-32 aa
PF12895ANAPC319-93 aa
PF13174TPR_619-33 aa
PF21170FAN1_TPR20-82 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG091870PF13176TPR_714321e-0938.4
TkAUNG091870PF13371TPR_916739.4e-2277.6
TkAUNG091870PF13428TPR_1417332e-1968.8
TkAUNG091870PF14853Fis1_TPR_C18324.6e-0524.2
TkAUNG091870PF14559TPR_1919322.2e-2176.7
TkAUNG091870PF12895ANAPC319936.2e-1246.4
TkAUNG091870PF13174TPR_619332.3e-1144.3
TkAUNG091870PF21170FAN1_TPR20820.8510.3
TkAUNG091870PF00515TPR_141692.2e-53176.7
TkAUNG091870PF07719TPR_241691.1e-38128.8
TkAUNG091870PF13181TPR_841695e-35117.4
TkAUNG091870PF30484ETO1_C42694.7e-0523.4
TkAUNG091870PF13428TPR_1443782e-1968.8
TkAUNG091870PF12569NatA_aux_su44960.001917.9
TkAUNG091870PF13371TPR_946919.4e-2277.6
TkAUNG091870PF03704BTAD481000.01216.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JS25Arabidopsis thalianasp|F4JS25|SRFR1_ARATH Suppressor of RPS4-RLD 165.500%Swiss-ProtHigh

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