TkAUNG089470 | RubberDandelionOmics

Gene overview

TkAUNG089470

Reference: TK1151 Chr: ChrUn Coordinates: 25398841-25404755 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1401 bp · TkAUNG089470|TK1151|cDNA

TAGAAACTTCATTTTAAATTAAATTTTAAATAGAAAATGATACATGCTTGTACTGTACTAACAGAGTAGCCTGAGTAAGAATCAGAAATGTTCATGATACTCCTCCGCCGGAGTTCCGGCCGCCGCCTCTTCTCCACCAGCACCATTACCCCAACCTCCGTTCCAGGTTCCTTAAACCTCTACACCAAGTATTCCTTTACTCCTCCTCCATCACTTGATAAAAACCCTAACAACCAAACACAACATGCCGATAACAACAC...

CDS

Download CDS FASTA

1257 bp · TkAUNG089470|TK1151|CDS

ATGTTCATGATACTCCTCCGCCGGAGTTCCGGCCGCCGCCTCTTCTCCACCAGCACCATTACCCCAACCTCCGTTCCAGGTTCCTTAAACCTCTACACCAAGTATTCCTTTACTCCTCCTCCATCACTTGATAAAAACCCTAACAACCAAACACAACATGCCGATAACAACACCAACAAGAAGAAAAAGAAGCCTCTCTATCGTCCTCCGTCTTCTCTAGACAGGTCCGGCGAGAAACCCATAAAGTCCGACCTCCCGTT...

Protein

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419 aa · TkAUNG089470|TK1151|PROTEIN

MFMILLRRSSGRRLFSTSTITPTSVPGSLNLYTKYSFTPPPSLDKNPNNQTQHADNNTNKKKKKPLYRPPSSLDRSGEKPIKSDLPFDFRFSYTESNPAVRPIGLREPKYSPFGPERVDREWTGVCAPAVDPMAGKEETEKLEAKRKKIRERIQGEELTNAERIALVERCGKHKTKRQINLGRDGLTHNMLNDIHNNWKHSEAVRIKCMGVPTVDMKNVCTQLEDKAFGKIIHRHGGSLVLYRGRNYNPKKRPIIPIMLW...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG089470`
TK1151 ID	TkAUNG089470
OH-1004 ID	LXL04_030941
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	53.500
Protein coverage (%)	TK1151 72.792 / OH-1004 77.953 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG089470

Location ChrUn:25398841-25404755 (-)

Description Similar to At5g54890: CRS2-associated factor 2, mitochondrial

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g31010`	May be involved in the splicing of group IIB introns in mitochondria.	No verified direct reference in this release
`At5g54890`	May be involved in the splicing of group IIB introns in mitochondria.	No verified direct reference in this release
`At2g20020`	Required for the splicing of group IIB introns in chloroplasts.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os08g0174900`	May be involved in the splicing of group IIB introns in mitochondria.	No verified direct reference in this release
`Os08g0188000`	May be involved in the splicing of group IIB introns in mitochondria.	No verified direct reference in this release
`Os01g0495900`	Required for the splicing of group IIB introns in chloroplasts.	No verified direct reference in this release
`Os01g0323300`	Required for the splicing of group IIB introns in chloroplasts.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_030941 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000373 Group II intron splicing Biological Process

GO:0006397 mRNA processing Biological Process

GO:0009793 embryo development ending in seed dormancy Biological Process

GO:0032981 mitochondrial respiratory chain complex I assembly Biological Process

GO:0033617 mitochondrial respiratory chain complex IV assembly Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0009570 chloroplast stroma Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003723 RNA binding Molecular Function

KEGG gene cross-reference

ath:AT4G31010

ath:AT5G54890

dosa:Os08g0174900

dosa:Os08g0188000

zma:542682

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.786

Rank 1 · TkAUNG089470 · TK1151

Mitochondrion0.169

Rank 2 · TkAUNG089470 · TK1151

Nucleus0.084

Rank 3 · TkAUNG089470 · TK1151

Cytoplasm0.058

Rank 4 · TkAUNG089470 · TK1151

Peroxisome0.012

Rank 5 · TkAUNG089470 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01985CRS1_YhbY158-243 aa

PF01985CRS1_YhbY278-361 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG089470	`PF01985`	CRS1_YhbY	158	243	1.9e-32	112.1
TkAUNG089470	`PF01985`	CRS1_YhbY	278	361	1.9e-32	112.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8VYD9`	Arabidopsis thaliana	sp\|Q8VYD9\|CAF1M_ARATH CRS2-associated factor 1, mitochondrial	65.400%	Swiss-Prot	High
`Q9FFU1`	Arabidopsis thaliana	sp\|Q9FFU1\|CAF2M_ARATH CRS2-associated factor 2, mitochondrial	53.400%	Swiss-Prot	High
`Q9SL79`	Arabidopsis thaliana	sp\|Q9SL79\|CAF1P_ARATH CRS2-associated factor 1, chloroplastic	46.500%	Swiss-Prot	Medium
`Q6Z4U2`	Oryza sativa subsp. japonica	sp\|Q6Z4U2\|CAF1M_ORYSJ CRS2-associated factor 1, mitochondrial	71.800%	Swiss-Prot	High
`Q0J7J7`	Oryza sativa subsp. japonica	sp\|Q0J7J7\|CAF2M_ORYSJ CRS2-associated factor 2, mitochondrial	54.500%	Swiss-Prot	High
`Q5VMQ5`	Oryza sativa subsp. japonica	sp\|Q5VMQ5\|CAF1P_ORYSJ CRS2-associated factor 1, chloroplastic	46.700%	Swiss-Prot	Medium
`Q657G7`	Oryza sativa subsp. japonica	sp\|Q657G7\|CAF2P_ORYSJ CRS2-associated factor 2, chloroplastic	55.900%	Swiss-Prot	High

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