TkAUNG089230 | RubberDandelionOmics

Gene overview

TkAUNG089230

Reference: TK1151 Chr: ChrUn Coordinates: 25325775-25328307 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

735 bp · TkAUNG089230|TK1151|cDNA

TCAATGAGAATCTAAAAGGGCCGTCGTTGGATGAGAAGAATTTCGGGTTGTTTCGACCCGATTTCACTCAAGTTTATAACATCGGGATTATGCACGGATCACAGTCAGCGACCCCATCACCAAAGCCAACAACTCCGACACCGGCACCAACACCAGGGGCACCTATATCAGCCCAAGGCAAGAGGTGGTGTGTGCCAAAACCAGATGCCAACGATGTGGCACTTCAGTCCAACATAGATTACATATGCAGTAATGGCATC...

CDS

Download CDS FASTA

357 bp · TkAUNG089230|TK1151|CDS

ATGCACGGATCACAGTCAGCGACCCCATCACCAAAGCCAACAACTCCGACACCGGCACCAACACCAGGGGCACCTATATCAGCCCAAGGCAAGAGGTGGTGTGTGCCAAAACCAGATGCCAACGATGTGGCACTTCAGTCCAACATAGATTACATATGCAGTAATGGCATCGATTGTAGTCCCACCCAGCCTGGTGGGACTTGCTTTGAGCCGAATACTATTCGAGCTCATGCATCGTTCCTTATGAATTTTTATTATCA...

Protein

Download Protein FASTA

118 aa · TkAUNG089230|TK1151|PROTEIN

MHGSQSATPSPKPTTPTPAPTPGAPISAQGKRWCVPKPDANDVALQSNIDYICSNGIDCSPTQPGGTCFEPNTIRAHASFLMNFYYQVHGRHNFDCDFAHTGIIASTDPSNGPCKYIA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG089230`
TK1151 ID	TkAUNG089230
OH-1004 ID	LXL04_035049
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 25.652 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkAUNG089230`
Location	ChrUn:25325775-25328307 (+)
Description	Similar to GLC1: Glucan endo-1,3-beta-glucosidase
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_035049` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0005975 carbohydrate metabolic process Biological Process GO:0006076 (1->3)-beta-D-glucan catabolic process Biological Process GO:0006952 defense response Biological Process GO:0009793 embryo development ending in seed dormancy Biological Process GO:0010584 pollen exine formation Biological Process GO:0071555 cell wall organization Biological Process GO:0005576 extracellular region Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009506 plasmodesma Cellular Component GO:0016020 membrane Cellular Component GO:0098552 side of membrane Cellular Component GO:0042803 protein homodimerization activity Molecular Function
KEGG gene cross-reference	ath:AT4G14080 ath:AT4G29360 ath:AT4G34480 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.443

Rank 1 · TkAUNG089230 · TK1151

Cytoplasm0.303

Rank 2 · TkAUNG089230 · TK1151

Endoplasmic reticulum0.143

Rank 3 · TkAUNG089230 · TK1151

Lysosome / Vacuole0.093

Rank 4 · TkAUNG089230 · TK1151

Nucleus0.077

Rank 5 · TkAUNG089230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07983X833-102 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG089230	`PF07983`	X8	33	102	1.9e-21	77.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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