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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG089160
Reference: TK1151 Chr: ChrUn Coordinates: 25299848-25303819 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3215 bp · TkAUNG089160|TK1151|cDNA

TAGGAGAACAGATGGACCAGCACAGGACTAACAAAAATCGGATGCTGTTTGAACGATTTGCGTCGCCTTCTTTCTCGCCGTGTCCATCTTCCTCGCCGTCTCCAGCTTTCTCGTCGCCTCCATTTACAATCGAATCTTCATCCAGAACACAATATCATCGACACCTCTCCATCCATTACACGCTGGTCACAACTCGATATAAGTTATAACCGCAGTGAAGCGCGGCTGTCGTTCCCTAGTTTGAAACTATGCCTTCTAAG...

CDS

Download CDS FASTA

2850 bp · TkAUNG089160|TK1151|CDS

ATGCCTTCTAAGGGCAAGAAGAGCTCCAAGTCAAAGGCTTTTTCCAATTCAGATGCAACATCACAGTCTCCTGTCAGCAGTTCGTCCACATATTCGAATCAGAACTCAAGTTATAACGGTGAAGGTGATGAACAATTGCTATTGCGCTCACTCGAAGAGACTTCTACCAAGTACCCATCATTAATTGGTACTTCTGCTTTGATTTGTCAACTCATTGAAGATGCTTCTGGTGGAATTGAGTCCAAAGGGTGTAAAGTATG...

Protein

Download Protein FASTA

949 aa · TkAUNG089160|TK1151|PROTEIN

MPSKGKKSSKSKAFSNSDATSQSPVSSSSTYSNQNSSYNGEGDEQLLLRSLEETSTKYPSLIGTSALICQLIEDASGGIESKGCKVWLSDAAMVASSITPGSIVSVSLASSRRDVSSHLLSSLVDECARHYGFNEKVVNEIGNYFLLATVFPSSKVSKNGVRLSSTLLSAMGYPVSGRMIFVYPVNIGNGNNYFSINKCKDLHLSLVSSNNSFNTKNNKLCHTEFPTVHNGQHENGSPKTPQLTRSKLTSPRSSQPTSPR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG089160
TK1151 IDTkAUNG089160
OH-1004 IDLXL04_000208
Relationship / confidenceRbh Sequence Supported / Probable
Protein identity (%)99.200
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG089160
LocationChrUn:25299848-25303819 (+)
DescriptionSimilar to AF_1297: Cell division cycle protein 48 homolog AF_1297 (Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g56690 Calmodulin-interacting protein 111. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000208 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0042273 ribosomal large subunit biogenesis Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0009535 chloroplast thylakoid membrane Cellular Component
GO:0005516 calmodulin binding Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0016887 ATP hydrolysis activity Molecular Function
KEGG gene cross-reference
afu:AF_1297
ath:AT3G56690
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.353
Rank 1 · TkAUNG089160 · TK1151
Nucleus0.315
Rank 2 · TkAUNG089160 · TK1151
Plastid0.136
Rank 3 · TkAUNG089160 · TK1151
Mitochondrion0.109
Rank 4 · TkAUNG089160 · TK1151
Peroxisome0.070
Rank 5 · TkAUNG089160 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF26429DPBB_CI11150-185 aa
PF26429DPBB_CI111263-276 aa
PF14532Sigma54_activ_2328-370 aa
PF03215Rad17402-445 aa
PF14532Sigma54_activ_2402-443 aa
PF00931NB-ARC404-438 aa
PF05673DUF815405-439 aa
PF12775AAA_7407-437 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG089160PF26429DPBB_CI111501851.2e-52178.2
TkAUNG089160PF26429DPBB_CI1112632761.2e-52178.2
TkAUNG089160PF14532Sigma54_activ_23283700.01216.6
TkAUNG089160PF03215Rad174024450.0009619.9
TkAUNG089160PF14532Sigma54_activ_24024430.01216.6
TkAUNG089160PF00931NB-ARC4044380.04813.9
TkAUNG089160PF05673DUF8154054390.0314.2
TkAUNG089160PF12775AAA_74074370.0008219.7
TkAUNG089160PF00005ABC_tran4094360.005917.9
TkAUNG089160PF06745ATPase4094330.2811.2
TkAUNG089160PF02367TsaE4124490.0004520.9
TkAUNG089160PF13481AAA_254124320.1112.8
TkAUNG089160PF01695IstB_IS214154860.0002121.6
TkAUNG089160PF20720nSTAND34154590.0002721.4
TkAUNG089160PF05496RuvB_N4164895e-1246.6
TkAUNG089160PF13191AAA_164165216.2e-1247.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LET7Arabidopsis thalianasp|Q9LET7|CI111_ARATH Calmodulin-interacting protein 11156.700%Swiss-ProtHigh

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