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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG080900
Reference: TK1151 Chr: ChrUn Coordinates: 23056258-23060141 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1006 bp · TkAUNG080900|TK1151|cDNA

ATATTCGACATTTTATTGACACCGGATCTATGGAAAAAGTCTGCAAATGTCCCGGCTCTTGTCCGTTTGCTTCAGTCGTTTCTCCAACAGGCGCCCAATGAGCTTAACAGAGAAGGGAGGTTAAGACTTGTGCTTGGGATATTCAACAAGCTTGTGTCGTCACCCAGTACAGAAGAACAGGGGTTTCATATTCTGAACCCAATCATTGAGAACCTTGGGTATGACGTGATGGCGGAATACATGAACCACATCTGGGCTTC...

CDS

Download CDS FASTA

2913 bp · TkAUNG080900|TK1151|CDS

ATGGAGTGGAATCAACAAACCCTACAGTTTCTTTCGCAATCTTTCCTCGATACACTTTCCCCTCATCCAGAACCCCGTCGCCGTGCTGAAAAGAATTTATCCGACGCCGCAGATACTCCTAACTACGGCCTTGCCGTTCTCCGTCTCGTTGCTGAACCTTCCGTGGATGAGCAGATCCGCCAATGCGCCGCTGTTAACTTCAAGAATCATCTTAAAACCCGGTGGGTGCCCTCATCTGCTAACCCTATTCCCGATGGTGA...

Protein

Download Protein FASTA

970 aa · TkAUNG080900|TK1151|PROTEIN

MEWNQQTLQFLSQSFLDTLSPHPEPRRRAEKNLSDAADTPNYGLAVLRLVAEPSVDEQIRQCAAVNFKNHLKTRWVPSSANPIPDGEKEQIKTLIVPLMLSATSRIQAQLSEALAVIGNHDFPKLWPALLPELRSSLETAINANDFASLNGILATVNSLFKKFRYQFKSDPILLDLKYCLDNFAAPLLSTVESISGKINEAAGSAATLRQLIEAQRLCFRIFYSLNFLDLPEFFEDTADKWMNEFKNYLTVRYPALEDAG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkAUNG080900
TK1151 IDTkAUNG080900
OH-1004 IDLXL04_026637
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.900
Protein coverage (%)TK1151 99.175 / OH-1004 89.405
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG080900
LocationChrUn:23056258-23060141 (-)
DescriptionSimilar to CAS: Exportin-2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At2g46520 Export receptor for importin alpha. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_026637 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006606 protein import into nucleus Biological Process
GO:0006611 protein export from nucleus Biological Process
GO:0005634 nucleus Cellular Component
GO:0005635 nuclear envelope Cellular Component
GO:0005654 nucleoplasm Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0016020 membrane Cellular Component
GO:0070062 extracellular exosome Cellular Component
GO:0005049 nuclear export signal receptor activity Molecular Function
KEGG gene cross-reference
ath:AT2G46520
bta:518622
hsa:1434
mmu:110750
xla:444464
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.736
Rank 1 · TkAUNG080900 · TK1151
Cytoplasm0.596
Rank 2 · TkAUNG080900 · TK1151
Endoplasmic reticulum0.024
Rank 3 · TkAUNG080900 · TK1151
Mitochondrion0.024
Rank 4 · TkAUNG080900 · TK1151
Cell membrane0.023
Rank 5 · TkAUNG080900 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03378CAS_CSE16-49 aa
PF03810IBN_N29-101 aa
PF08389Xpo1106-142 aa
PF12460MMS19_C125-190 aa
PF08506Cse1159-525 aa
PF03810IBN_N245-280 aa
PF30709DUF1839_C268-292 aa
PF12460MMS19_C281-325 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG080900PF03378CAS_CSE16498.1e-151503.1
TkAUNG080900PF03810IBN_N291018.2e-1555.3
TkAUNG080900PF08389Xpo11061420.0614.1
TkAUNG080900PF12460MMS19_C1251900.009415.7
TkAUNG080900PF08506Cse11595251.2e-125420.0
TkAUNG080900PF03810IBN_N2452808.2e-1555.3
TkAUNG080900PF30709DUF1839_C2682920.05314.3
TkAUNG080900PF12460MMS19_C2813250.009415.7
TkAUNG080900PF03378CAS_CSE12913488.1e-151503.1
TkAUNG080900PF30709DUF1839_C5025190.05314.3
TkAUNG080900PF03378CAS_CSE15269608.1e-151503.1
TkAUNG080900PF08389Xpo15556040.0614.1
TkAUNG080900PF12460MMS19_C5886550.009415.7
TkAUNG080900PF30709DUF1839_C6196710.05314.3
TkAUNG080900PF08389Xpo17007390.0614.1
TkAUNG080900PF12460MMS19_C7047440.009415.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9ZPY7Arabidopsis thalianasp|Q9ZPY7|XPO2_ARATH Exportin-265.700%Swiss-ProtHigh

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