TkAUNG067750 | RubberDandelionOmics

Gene overview

TkAUNG067750

Reference: TK1151 Chr: ChrUn Coordinates: 19668858-19672564 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2962 bp · TkAUNG067750|TK1151|cDNA

TTGTTTGCTTGTTATCAACTCCACTATCAGTTTTCATTGAAGAAAACAACGCTGGAAATGCCGCCGCTGCACTTATGGCTGGTCTTGCACCTAAAACCAAGGTTCTAAGGGACGGTCGATGGAGTGAACAAGAAGCTGCTATTTTGGTTCCGGGAGATATTATTAGCATCAAGCTCGGTGACATCGTACCTGCCGACGCTCGTCTTCTCGAAGGAGATCCTTTAAAAATCGATCAATCTGCACTTACCGGCGAATCCCTC...

CDS

Download CDS FASTA

684 bp · TkAUNG067750|TK1151|CDS

ATGACCGTCATCTTCTTCTGGATCATGATTGACACCGACTTCTTCTCAGATAAATTCGGTGTGAAGTCAATTAGGGCAAGTGAAACCGAGATGATGGCTGCTTTATATCTACAAGTGAGTATCGTGAGTCAGGCTTTGATCTTCGTGACCCGATCCCGCAGCTGGTCGTTTCTAGAACGTCCTGGATTCTTGCTCATGGGCGCTTTCCTAGCCGCACAACTGGTGGCTACTTTAATAGCGGTGTATGCGGATTGGAGTTT...

Protein

Download Protein FASTA

227 aa · TkAUNG067750|TK1151|PROTEIN

MTVIFFWIMIDTDFFSDKFGVKSIRASETEMMAALYLQVSIVSQALIFVTRSRSWSFLERPGFLLMGAFLAAQLVATLIAVYADWSFARIKGIGWKWAGVVWLYSIVFYFPLDIMKFAIRYILSGKAWNNLLDNKTAFTTKKDYGREEREAQWALAQRTLHGLQAPDASNMFNEKSSYRELSEIAEQAKRRAEVARLREVLTLKGHVESVVKLKGLDIDTIQQHYTV

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG067750`
TK1151 ID	TkAUNG067750
OH-1004 ID	LXL04_017998
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	92.100
Protein coverage (%)	TK1151 100.000 / OH-1004 23.795 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG067750

Location ChrUn:19668858-19672564 (+)

Description Similar to PMA4: Plasma membrane ATPase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g24520`	The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport.	No verified direct reference in this release
`At4g30190`	The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport.	Mechanism of proton transport by plant plasma membrane proton ATPases.2003 · DOI: 10.1007/s10265-003-0111-9 The effect of a genetically reduced plasma membrane protonmotive force on vegetative growth of Arabidopsis.2012 · DOI: 10.1104/pp.111.189167 Abscisic acid suppresses hypocotyl elongation by dephosphorylating plasma membrane H(+)-ATPase in Arabidopsis thaliana.2014 · DOI: 10.1093/pcp/pcu028 The plasma membrane H(+) -ATPase AHA2 contributes to the root architecture in response to different nitrogen supply.2015 · DOI: 10.1111/ppl.12305 Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1.2015 · DOI: 10.1105/tpc.15.00306 Direct observation of proton pumping by a eukaryotic P-type ATPase.2016 · DOI: 10.1126/science.aad6429

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0656100`	The plasma membrane ATPase of plants and fungi is a hydrogen ion pump.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017998 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0051453 regulation of intracellular pH Biological Process

GO:0120029 proton export across plasma membrane Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008553 P-type proton-exporting transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G24520

ath:AT4G30190

dosa:Os04g0656100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.384

Rank 1 · TkAUNG067750 · TK1151

Golgi apparatus0.280

Rank 2 · TkAUNG067750 · TK1151

Cell membrane0.209

Rank 3 · TkAUNG067750 · TK1151

Cytoplasm0.147

Rank 4 · TkAUNG067750 · TK1151

Nucleus0.089

Rank 5 · TkAUNG067750 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9SJB3`	Arabidopsis thaliana	sp\|Q9SJB3\|PMA5_ARATH ATPase 5, plasma membrane-type	76.700%	Swiss-Prot	High
`P19456`	Arabidopsis thaliana	sp\|P19456\|PMA2_ARATH ATPase 2, plasma membrane-type	79.300%	Swiss-Prot	High
`Q7XPY2`	Oryza sativa subsp. japonica	sp\|Q7XPY2\|PMA1_ORYSJ Plasma membrane ATPase	83.000%	Swiss-Prot	High

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