TkAUNG067100 | RubberDandelionOmics

Gene overview

TkAUNG067100

Reference: TK1151 Chr: ChrUn Coordinates: 19490446-19491775 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

966 bp · TkAUNG067100|TK1151|cDNA

ATGGCTTTTATATCAAATGGTGCTAATGCCATAGGTTTAAGAGAGAAGCACCAGGTTGCTTGCGAGATTGGACTGCCATACTTTCCCTTGGATTTTCCTGATTGTAATGCATATTCGCAATTTATGGAAATGGAAGCTGTTGGAGTCAACCATAAAACAAGGCTTCTTCCTCCTCCTAAGAGACCACTGGAAGTTCCAATACCACCTCCCTGGAATTGTGTGCACCATAATTTTGAAAAAAGATTGAGTAAAGCTGGAAT...

CDS

Download CDS FASTA

966 bp · TkAUNG067100|TK1151|CDS

ATGGCTTTTATATCAAATGGTGCTAATGCCATAGGTTTAAGAGAGAAGCACCAGGTTGCTTGCGAGATTGGACTGCCATACTTTCCCTTGGATTTTCCTGATTGTAATGCATATTCGCAATTTATGGAAATGGAAGCTGTTGGAGTCAACCATAAAACAAGGCTTCTTCCTCCTCCTAAGAGACCACTGGAAGTTCCAATACCACCTCCCTGGAATTGTGTGCACCATAATTTTGAAAAAAGATTGAGTAAAGCTGGAAT...

Protein

Download Protein FASTA

321 aa · TkAUNG067100|TK1151|PROTEIN

MAFISNGANAIGLREKHQVACEIGLPYFPLDFPDCNAYSQFMEMEAVGVNHKTRLLPPPKRPLEVPIPPPWNCVHHNFEKRLSKAGILISKKSHTRNSNGRGTQFEGTIARTSSMLSDFLNNITGSRLLLFPKIPGQKNCLYKFMRNKEFLNTQTVMSRVEFGKTPCYLRVLLCAFREGVFEQGAVVCAPHAADIMLWKASSEGDHQQLQIPESLLNSYFLQLPSGKWDLRVHDDQALHESHRWPIGFVTTGFVRGRQEG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG067100`
TK1151 ID	TkAUNG067100
OH-1004 ID	LXL04_032973
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	46.300
Protein coverage (%)	TK1151 98.442 / OH-1004 39.338 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG067100

Location ChrUn:19490446-19491775 (-)

Description Similar to POP1: Ribonucleases P/MRP protein subunit POP1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47300`	Component of ribonuclease P, a ribonucleoprotein complex that generates mature tRNA molecules by cleaving their 5'-ends.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_032973 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001682 tRNA 5'-leader removal Biological Process

GO:0006364 rRNA processing Biological Process

GO:0006396 RNA processing Biological Process

GO:0008033 tRNA processing Biological Process

GO:0016078 tRNA decay Biological Process

GO:0000172 ribonuclease MRP complex Cellular Component

GO:0005615 extracellular space Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005654 nucleoplasm Cellular Component

GO:0005655 nucleolar ribonuclease P complex Cellular Component

GO:0005730 nucleolus Cellular Component

GO:0030681 multimeric ribonuclease P complex Cellular Component

KEGG gene cross-reference

ath:AT2G47300

cel:CELE_C05D11.9

hsa:10940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.946

Rank 1 · TkAUNG067100 · TK1151

Cytoplasm0.107

Rank 2 · TkAUNG067100 · TK1151

Cell membrane0.021

Rank 3 · TkAUNG067100 · TK1151

Mitochondrion0.016

Rank 4 · TkAUNG067100 · TK1151

Endoplasmic reticulum0.011

Rank 5 · TkAUNG067100 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08170POPLD2-72 aa

PF22770POP1_C167-203 aa

PF22770POP1_C235-311 aa

PF08170POPLD274-288 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG067100	`PF08170`	POPLD	2	72	3.8e-10	40.6
TkAUNG067100	`PF22770`	POP1_C	167	203	2.7e-12	48.0
TkAUNG067100	`PF22770`	POP1_C	235	311	2.7e-12	48.0
TkAUNG067100	`PF08170`	POPLD	274	288	3.8e-10	40.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4IL30`	Arabidopsis thaliana	sp\|F4IL30\|POP1_ARATH Ribonucleases P/MRP protein subunit POP1	47.400%	Swiss-Prot	Medium

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