TkAUNG047230 | RubberDandelionOmics

Gene overview

TkAUNG047230

Reference: TK1151 Chr: ChrUn Coordinates: 13077999-13081827 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2406 bp · TkAUNG047230|TK1151|cDNA

ATGTGGAATCCTCTCTCATGGGTCATGGAGGCTGCAGCTATTATGGCAATTGCCCTGGCCAATGGAGGCGGAAAGCCCCCAGATTGGCAAGACTTCGTTGGTATCGTTTGCTTGCTCGTTATCAACTCAACCATCAGTTTCATTGAAGAAAATAATGCTGGAAACGCTGCTGCTGCCCTTATGGCTGGTCTTGCTCCTAAAACAAAGGTTCTCAGAGATGGTAGGTGGAGTGAACAAGAAGCTGCCATTCTGGTACCTGG...

CDS

Download CDS FASTA

2406 bp · TkAUNG047230|TK1151|CDS

ATGTGGAATCCTCTCTCATGGGTCATGGAGGCTGCAGCTATTATGGCAATTGCCCTGGCCAATGGAGGCGGAAAGCCCCCAGATTGGCAAGACTTCGTTGGTATCGTTTGCTTGCTCGTTATCAACTCAACCATCAGTTTCATTGAAGAAAATAATGCTGGAAACGCTGCTGCTGCCCTTATGGCTGGTCTTGCTCCTAAAACAAAGGTTCTCAGAGATGGTAGGTGGAGTGAACAAGAAGCTGCCATTCTGGTACCTGG...

Protein

Download Protein FASTA

801 aa · TkAUNG047230|TK1151|PROTEIN

MWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQVLTAIGNFCICSIAVGMLAEIIVMYPIQHREYRKGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVFAKGVDPEHVLLLAARASRTENQDAIDAAIVGTLADPKEARAGVKEIHFFPFNPVDKRT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG047230`
TK1151 ID	TkAUNG047230
OH-1004 ID	LXL04_017998
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	83.600
Protein coverage (%)	TK1151 100.000 / OH-1004 92.767 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG047230

Location ChrUn:13077999-13081827 (+)

Description Similar to PMA4: Plasma membrane ATPase 4

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g30190`	The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport.	Mechanism of proton transport by plant plasma membrane proton ATPases.2003 · DOI: 10.1007/s10265-003-0111-9 The effect of a genetically reduced plasma membrane protonmotive force on vegetative growth of Arabidopsis.2012 · DOI: 10.1104/pp.111.189167 Abscisic acid suppresses hypocotyl elongation by dephosphorylating plasma membrane H(+)-ATPase in Arabidopsis thaliana.2014 · DOI: 10.1093/pcp/pcu028 The plasma membrane H(+) -ATPase AHA2 contributes to the root architecture in response to different nitrogen supply.2015 · DOI: 10.1111/ppl.12305 Phytosulfokine Regulates Growth in Arabidopsis through a Response Module at the Plasma Membrane That Includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1.2015 · DOI: 10.1105/tpc.15.00306 Direct observation of proton pumping by a eukaryotic P-type ATPase.2016 · DOI: 10.1126/science.aad6429
`At5g57350`	The plasma membrane H(+) ATPase of plants and fungi generates a proton gradient that drives the active transport of nutrients by H(+)-symport.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os04g0656100`	The plasma membrane ATPase of plants and fungi is a hydrogen ion pump.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_017998 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0051453 regulation of intracellular pH Biological Process

GO:0120029 proton export across plasma membrane Biological Process

GO:1902600 proton transmembrane transport Biological Process

GO:0000325 plant-type vacuole Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009506 plasmodesma Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0000287 magnesium ion binding Molecular Function

GO:0005524 ATP binding Molecular Function

GO:0008553 P-type proton-exporting transporter activity Molecular Function

KEGG gene cross-reference

ath:AT2G24520

ath:AT4G30190

dosa:Os04g0656100

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.494

Rank 1 · TkAUNG047230 · TK1151

Endoplasmic reticulum0.169

Rank 2 · TkAUNG047230 · TK1151

Cytoplasm0.115

Rank 3 · TkAUNG047230 · TK1151

Golgi apparatus0.112

Rank 4 · TkAUNG047230 · TK1151

Lysosome / Vacuole0.106

Rank 5 · TkAUNG047230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00122E1-E2_ATPase65-114 aa

PF13246Cation_ATPase224-344 aa

PF08282Hydrolase_3284-308 aa

PF00702Hydrolase309-453 aa

PF00122E1-E2_ATPase358-383 aa

PF08282Hydrolase_3427-473 aa

PF08282Hydrolase_3705-736 aa

PF21325SHPRH_helical-1st720-784 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG047230	`PF00122`	E1-E2_ATPase	65	114	2.2e-12	47.4
TkAUNG047230	`PF13246`	Cation_ATPase	224	344	2e-08	35.0
TkAUNG047230	`PF08282`	Hydrolase_3	284	308	0.002	18.6
TkAUNG047230	`PF00702`	Hydrolase	309	453	8.1e-12	46.6
TkAUNG047230	`PF00122`	E1-E2_ATPase	358	383	2.2e-12	47.4
TkAUNG047230	`PF08282`	Hydrolase_3	427	473	0.002	18.6
TkAUNG047230	`PF08282`	Hydrolase_3	705	736	0.002	18.6
TkAUNG047230	`PF21325`	SHPRH_helical-1st	720	784	0.12	13.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P19456`	Arabidopsis thaliana	sp\|P19456\|PMA2_ARATH ATPase 2, plasma membrane-type	78.600%	Swiss-Prot	High
`P20431`	Arabidopsis thaliana	sp\|P20431\|PMA3_ARATH ATPase 3, plasma membrane-type	77.700%	Swiss-Prot	High
`Q7XPY2`	Oryza sativa subsp. japonica	sp\|Q7XPY2\|PMA1_ORYSJ Plasma membrane ATPase	80.000%	Swiss-Prot	High

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