TkAUNG035770 | RubberDandelionOmics

Gene overview

TkAUNG035770

Reference: TK1151 Chr: ChrUn Coordinates: 9807400-9809668 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1381 bp · TkAUNG035770|TK1151|cDNA

CTGCCTTGGCGAGGGTGGCACATCCTCTTAGCTCTCTCACTTCCATTACTCTTGCTTAGCTATAAGTATATAGTGGCCGGACGCATAAACAACTCTTTCATGCTTGGAACATCCCCCAACACAAATCAAAAACCCAAAACCCATTTCACTGTTTCCAATTCAGCCATGGCTACCAGAGACTCGCTACCTGTGAAAACTGCACAGCAGATGGCCATGGATGGCGATCAACCACCTCCCAACTACATCTTCAGCAACACCAC...

CDS

Download CDS FASTA

1239 bp · TkAUNG035770|TK1151|CDS

CTGCCTTGGCGAGGGTGGCACATCCTCTTAGCTCTCTCACTTCCATTACTCTTGCTTAGCTATAAGTATATAGTGGCCGGACGCATAAACAACTCTTTCATGCTTGGAACATCCCCCAACACAAATCAAAAACCCAAAACCCATTTCACTGTTTCCAATTCAGCCATGGCTACCAGAGACTCGCTACCTGTGAAAACTGCACAGCAGATGGCCATGGATGGCGATCAACCACCTCCCAACTACATCTTCAGCAACACCAC...

Protein

Download Protein FASTA

412 aa · TkAUNG035770|TK1151|PROTEIN

LPWRGWHILLALSLPLLLLSYKYIVAGRINNSFMLGTSPNTNQKPKTHFTVSNSAMATRDSLPVKTAQQMAMDGDQPPPNYIFSNTTKSNYTKFGPLETSPPLASVPIIDISCFFSTSKQDDQETELAKLRSALSTWGCFQAVNHGLPYSYLDNVRQVIKQFFELPLEEKRKYFRETGSVEGYGNDMTYSENQAQDWCDRLFLRILPEDQRKLRFWPKNPSNLRETINDYTNKIKSISIVIFEAMAKSLDLEESSFSKYF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG035770`
TK1151 ID	TkAUNG035770
OH-1004 ID	LXL04_002746
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	91.200
Protein coverage (%)	TK1151 95.388 / OH-1004 93.853 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG035770

Location ChrUn:9807400-9809668 (+)

Description Similar to 2ODD11: 2-oxoglutarate-dependent dioxygenase 11

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g17020`	Protein SRG1.	No verified direct reference in this release
`At3g21420`	Oxoglutarate-dependent dioxygenase involved in the biosynthesis of strigolactone natural products, bioactive compounds promoting plant fitness and soil microbe interactions, but preventing shoot branching.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0558700`	Involved in melatonin degradation.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_002746 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0010150 leaf senescence Biological Process

GO:0032259 methylation Biological Process

GO:0097295 morphine biosynthetic process Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0008168 methyltransferase activity Molecular Function

GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor Molecular Function

GO:0016706 2-oxoglutarate-dependent dioxygenase activity Molecular Function

GO:0030782 (S)-tetrahydroprotoberberine N-methyltransferase activity Molecular Function

GO:0031418 L-ascorbic acid binding Molecular Function

GO:0046872 metal ion binding Molecular Function

GO:0051213 dioxygenase activity Molecular Function

GO:0102802 thebaine 6-O-demethylase activity Molecular Function

KEGG gene cross-reference

ag:ADD85329

ag:ADD85331

ath:AT1G17020

dosa:Os10g0558700

osa:112935986

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.673

Rank 1 · TkAUNG035770 · TK1151

Nucleus0.384

Rank 2 · TkAUNG035770 · TK1151

Plastid0.084

Rank 3 · TkAUNG035770 · TK1151

Mitochondrion0.057

Rank 4 · TkAUNG035770 · TK1151

Endoplasmic reticulum0.055

Rank 5 · TkAUNG035770 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF14226DIOX_N106-219 aa

PF22724NCAB1187-268 aa

PF031712OG-FeII_Oxy271-365 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG035770	`PF14226`	DIOX_N	106	219	4e-28	99.1
TkAUNG035770	`PF22724`	NCAB1	187	268	0.041	14.7
TkAUNG035770	`PF03171`	2OG-FeII_Oxy	271	365	1.1e-30	106.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q39224`	Arabidopsis thaliana	sp\|Q39224\|SRG1_ARATH Protein SRG1	36.500%	Swiss-Prot	Medium
`Q9LIF4`	Arabidopsis thaliana	sp\|Q9LIF4\|LBO1_ARATH Protein LATERAL BRANCHING OXIDOREDUCTASE 1	37.300%	Swiss-Prot	Medium
`Q94LP4`	Oryza sativa subsp. japonica	sp\|Q94LP4\|ODD11_ORYSJ 2-oxoglutarate-dependent dioxygenase 11	36.500%	Swiss-Prot	Medium

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