TkAUNG034410 | RubberDandelionOmics

Gene overview

TkAUNG034410

Reference: TK1151 Chr: ChrUn Coordinates: 9332666-9335752 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1584 bp · TkAUNG034410|TK1151|cDNA

ATGAAAACTTTTGCAGCTGCTTTAACTTTCACCCTCTATCTTTTCTTAACCTATAACCCCAACACAATAGTTGAATCTTCATCAGATGGAAATAACGATAACAGGCAATGCAAGGCTTGGCTGGTTCAATCCATTCCCACTGACATGCCCCACCTGTCTCTTGTTCCTGGTGTTCTTTTTACCGGCGATGTTTTCCGATGGTTGGCCGGAAATTCTTTACGGAGCCTGGACATAATTGCACAGTACTGGCAGTTGATAGC...

CDS

Download CDS FASTA

1584 bp · TkAUNG034410|TK1151|CDS

ATGAAAACTTTTGCAGCTGCTTTAACTTTCACCCTCTATCTTTTCTTAACCTATAACCCCAACACAATAGTTGAATCTTCATCAGATGGAAATAACGATAACAGGCAATGCAAGGCTTGGCTGGTTCAATCCATTCCCACTGACATGCCCCACCTGTCTCTTGTTCCTGGTGTTCTTTTTACCGGCGATGTTTTCCGATGGTTGGCCGGAAATTCTTTACGGAGCCTGGACATAATTGCACAGTACTGGCAGTTGATAGC...

Protein

Download Protein FASTA

527 aa · TkAUNG034410|TK1151|PROTEIN

MKTFAAALTFTLYLFLTYNPNTIVESSSDGNNDNRQCKAWLVQSIPTDMPHLSLVPGVLFTGDVFRWLAGNSLRSLDIIAQYWQLIAHPHDPRSDDYGYSKDYMERFGANDGYEVYRALEKAADRNISMRLLQHSGFYPDYTEESSNLALGRPNVENVTLLLKDWVGSGIVHAKVWISDSRDVYIGSANNDWKSLTQVKEVGIYLVGCPRIAKQVEIYYDNLWKLAHLNPSNYTKLVSDDQWQIVRKVPCWSYFFSRKDR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG034410`
TK1151 ID	TkAUNG034410
OH-1004 ID	LXL04_018502
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	68.700
Protein coverage (%)	TK1151 94.877 / OH-1004 95.585 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID	`TkAUNG034410`
Location	ChrUn:9332666-9335752 (+)
Description	Similar to pldY: Phospholipase D Y
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_018502` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0002376 immune system process Biological Process GO:0006629 lipid metabolic process Biological Process GO:0016042 lipid catabolic process Biological Process GO:0034164 negative regulation of toll-like receptor 9 signaling pathway Biological Process GO:0044351 macropinocytosis Biological Process GO:1905367 positive regulation of intralumenal vesicle formation Biological Process GO:0000139 Golgi membrane Cellular Component GO:0005764 lysosome Cellular Component GO:0005765 lysosomal membrane Cellular Component GO:0005783 endoplasmic reticulum Cellular Component GO:0005789 endoplasmic reticulum membrane Cellular Component GO:0012505 endomembrane system Cellular Component
KEGG gene cross-reference	ddi:DDB_G0287649 hsa:23646 pon:100173883 xla:398831 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.444

Rank 1 · TkAUNG034410 · TK1151

Golgi apparatus0.262

Rank 2 · TkAUNG034410 · TK1151

Cytoplasm0.178

Rank 3 · TkAUNG034410 · TK1151

Endoplasmic reticulum0.137

Rank 4 · TkAUNG034410 · TK1151

Cell membrane0.127

Rank 5 · TkAUNG034410 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13918PLDc_3109-221 aa

PF13091PLDc_2112-223 aa

PF13918PLDc_3306-391 aa

PF13091PLDc_2448-502 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG034410	`PF13918`	PLDc_3	109	221	2.2e-15	57.5
TkAUNG034410	`PF13091`	PLDc_2	112	223	4.2e-13	49.9
TkAUNG034410	`PF13918`	PLDc_3	306	391	2.2e-15	57.5
TkAUNG034410	`PF13091`	PLDc_2	448	502	4.2e-13	49.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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