TkAUNG031730 | RubberDandelionOmics

Gene overview

TkAUNG031730

Reference: TK1151 Chr: ChrUn Coordinates: 8518612-8521346 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2029 bp · TkAUNG031730|TK1151|cDNA

AAATTATTTAACTCTAAGAATTTTATTAATCAGATGCTCCAGCGAGAAATACGAATTAGCCCTGAAAGTCGGTACTAATTTTCATTTGCTTGATTTGGTCTCCATTAAATTCTTTAATCCGAAAAGAATCATTCACCAACATTCAACTGGAACTAATCTTTATGGAAAACGATGCAATCCAACTTCCATTACTTGTCAACGAGCTCCATAACTGAAACCTGAGAAGAACTCACAACAATCAATCAATCAGGCCCTGTTTT...

CDS

Download CDS FASTA

666 bp · TkAUNG031730|TK1151|CDS

ATGATTGATGTATCTCACGCAATTACTTATTTGCATACGTACACAGAGTTACCGATAATCCACAGAGATATAAAGTCGGCAAATATTTTGATTACTGATAAATTGCGTGCAAAAGTAGCCGATTTTGGATTTGCACGTATAAGTGTTGAAGATCCAACCGCCACTCACATATCTACTCAAGTGAAAGGAACCGCAGGGTATTTAGATCCTGAATACCTGAGTACTTATCAGTTGACTGATAGGAGTGACGTGTACTCCTT...

Protein

Download Protein FASTA

221 aa · TkAUNG031730|TK1151|PROTEIN

MIDVSHAITYLHTYTELPIIHRDIKSANILITDKLRAKVADFGFARISVEDPTATHISTQVKGTAGYLDPEYLSTYQLTDRSDVYSFGVVLIEMVTGRLPIELNKATNEKFTTKWALQRLKGGEVVLAMDPKLRRNPASLMVVEKVLRLARQCVAPTRHLRPSMKKCAEVLWKIRKEYHEFNEVMEAANHSVQVAPQMGARKNRVEFFGIEESENQRFQSA

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG031730`
TK1151 ID	TkAUNG031730
OH-1004 ID	LXL04_036373
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 48.786 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkAUNG031730

Location ChrUn:8518612-8521346 (-)

Description Similar to CRCK1: Calmodulin-binding receptor-like cytoplasmic kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58940`	Calmodulin-binding receptor-like cytoplasmic kinase 1.	No verified direct reference in this release
`At4g00330`	Calmodulin-binding receptor-like cytoplasmic kinase 2.	No verified direct reference in this release
`At2g11520`	Calmodulin-binding receptor-like cytoplasmic kinase 3.	No verified direct reference in this release
`At5g49760`	Leucine-rich repeat receptor protein kinase that acts as sensor of extracellular hydrogen peroxide.	Hydrogen peroxide sensor HPCA1 is an LRR receptor kinase in Arabidopsis.2020 · DOI: 10.1038/s41586-020-2032-3
`At1g67720`	Probable LRR receptor-like serine/threonine-protein kinase At1g67720.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036373 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0032502 developmental process Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G06840

ath:AT1G23540

ath:AT2G11520

ath:AT4G00330

ath:AT5G58940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.618

Rank 1 · TkAUNG031730 · TK1151

Cytoplasm0.341

Rank 2 · TkAUNG031730 · TK1151

Nucleus0.229

Rank 3 · TkAUNG031730 · TK1151

Endoplasmic reticulum0.036

Rank 4 · TkAUNG031730 · TK1151

Golgi apparatus0.032

Rank 5 · TkAUNG031730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr2-171 aa

PF00069Pkinase3-172 aa

PF17667Pkinase_fungal13-93 aa

PF19974TCAD919-39 aa

PF19974TCAD9139-181 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG031730	`PF07714`	PK_Tyr_Ser-Thr	2	171	9.5e-24	84.8
TkAUNG031730	`PF00069`	Pkinase	3	172	6.4e-28	98.6
TkAUNG031730	`PF17667`	Pkinase_fungal	13	93	0.0014	18.2
TkAUNG031730	`PF19974`	TCAD9	19	39	0.066	13.1
TkAUNG031730	`PF19974`	TCAD9	139	181	0.066	13.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIL7`	Arabidopsis thaliana	sp\|Q9FIL7\|CRCK1_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 1	60.200%	Swiss-Prot	High
`Q8VZJ9`	Arabidopsis thaliana	sp\|Q8VZJ9\|CRCK2_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 2	62.800%	Swiss-Prot	High
`Q9ASQ5`	Arabidopsis thaliana	sp\|Q9ASQ5\|CRCK3_ARATH Calmodulin-binding receptor-like cytoplasmic kinase 3	52.800%	Swiss-Prot	High
`Q8GZ99`	Arabidopsis thaliana	sp\|Q8GZ99\|HPCA1_ARATH Leucine-rich repeat receptor protein kinase HPCA1	49.000%	Swiss-Prot	Medium
`C0LGI2`	Arabidopsis thaliana	sp\|C0LGI2\|Y1677_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g67720	44.400%	Swiss-Prot	Medium

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