LXL04_036373 | RubberDandelionOmics

Gene overview

LXL04_036373

Reference: OH-1004 Chr: Chr08 Coordinates: 41028957-41031017 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1362 bp · LXL04_036373|LXL04_036373|OH1004|cDNA

ATGAATCAAACAAGAAAATCTCCGGTGATTCGCCCCGGGCCTGGACAAGTTTGGAATCAGAGTTCTAGTTCCACCtccaattccaattccaattccaattccaattccgGTTCCGTATATGTCTTACCCAGTACTATACCCGAGCATAAGAAAAAAAGTTCTGTTTTCGGTATCATAGCTAGGGTTTTGACGTGTACGAGCGATATAGCTCACGTTGCCGAAGATCAAGCTCAACCGCCTTCAATTCAGTATTCGTCACG...

CDS

Download CDS FASTA

1362 bp · LXL04_036373|LXL04_036373|OH1004|CDS

ATGAATCAAACAAGAAAATCTCCGGTGATTCGCCCCGGGCCTGGACAAGTTTGGAATCAGAGTTCTAGTTCCACCTCCAATTCCAATTCCAATTCCAATTCCAATTCCGGTTCCGTATATGTCTTACCCAGTACTATACCCGAGCATAAGAAAAAAAGTTCTGTTTTCGGTATCATAGCTAGGGTTTTGACGTGTACGAGCGATATAGCTCACGTTGCCGAAGATCAAGCTCAACCGCCTTCAATTCAGTATTCGTCACG...

Protein

Download Protein FASTA

453 aa · LXL04_036373|LXL04_036373|OH1004|PROTEIN

MNQTRKSPVIRPGPGQVWNQSSSSTSNSNSNSNSNSGSVYVLPSTIPEHKKKSSVFGIIARVLTCTSDIAHVAEDQAQPPSIQYSSRTSLRGSRKLNHSASSTPTHASDGPQSTDELSFEDISKATGNFSATHIIGQGGFGIVYKATLKNGSTIAIKRAKKDNYERGTPVEFKNEIKTLSKIEHLNLVRFYGFIEHGDERVILVEYVANGTLREHLDGKRGNGLEIGERLDIMIDVSHAITYLHTYTELPIIHRDIKSAN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`LXL04_036373`
TK1151 ID	TkAUNG031730
OH-1004 ID	LXL04_036373
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 48.786 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	OH-1004 / GCA_047496595.1_OSU_TarKok_2.0

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · OH-1004

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID LXL04_036373

Location Chr08:41028957-41031017 (+)

Description Similar to CRCK1: Calmodulin-binding receptor-like cytoplasmic kinase 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58940`	Calmodulin-binding receptor-like cytoplasmic kinase 1.	No verified direct reference in this release
`At4g00330`	Calmodulin-binding receptor-like cytoplasmic kinase 2.	No verified direct reference in this release
`At2g11520`	Calmodulin-binding receptor-like cytoplasmic kinase 3.	No verified direct reference in this release
`At1g06840`	Probable LRR receptor-like serine/threonine-protein kinase At1g06840.	No verified direct reference in this release
`At1g23540`	Regulates the auxin-related MAX (More Axillary Growth) pathway during the shoot branching.	Over-expression of the IGI1 leading to altered shoot-branching development related to MAX pathway in Arabidopsis.2010 · DOI: 10.1007/s11103-010-9645-0

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036373 · GCA_047496595.1_OSU_TarKok_2.0.

GO annotations (OH1004 source)

GO:0009409 response to cold Biological Process

GO:0009555 pollen development Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0032502 developmental process Biological Process

GO:0042542 response to hydrogen peroxide Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

KEGG gene cross-reference

ath:AT1G06840

ath:AT1G23540

ath:AT2G11520

ath:AT4G00330

ath:AT5G58940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.679

Rank 1 · LXL04_036373 · OH-1004

Cytoplasm0.249

Rank 2 · LXL04_036373 · OH-1004

Nucleus0.238

Rank 3 · LXL04_036373 · OH-1004

Endoplasmic reticulum0.037

Rank 4 · LXL04_036373 · OH-1004

Golgi apparatus0.025

Rank 5 · LXL04_036373 · OH-1004

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069.32Pkinase131-404 aa

PF07714.24PK_Tyr_Ser-Thr132-403 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
LXL04_036373	`PF00069.32`	Pkinase	131	404	1.3e-49	169.7
LXL04_036373	`PF07714.24`	PK_Tyr_Ser-Thr	132	403	1.3e-45	156.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FIL7`	Arabidopsis thaliana	Calmodulin-binding receptor-like cytoplasmic kinase 1	60.000%	Swiss-Prot	strong database homology
`Q8VZJ9`	Arabidopsis thaliana	Calmodulin-binding receptor-like cytoplasmic kinase 2	58.667%	Swiss-Prot	moderate database homology
`Q9ASQ5`	Arabidopsis thaliana	Calmodulin-binding receptor-like cytoplasmic kinase 3	53.691%	Swiss-Prot	moderate database homology
`C0LGD7`	Arabidopsis thaliana	Probable LRR receptor-like serine/threonine-protein kinase At1g06840	36.126%	Swiss-Prot	moderate database homology
`Q9ZUE0`	Arabidopsis thaliana	Proline-rich receptor-like protein kinase PERK12	39.157%	Swiss-Prot	moderate database homology

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