TkAUNG022980 | RubberDandelionOmics

Gene overview

TkAUNG022980

Reference: TK1151 Chr: ChrUn Coordinates: 6181132-6182602 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

699 bp · TkAUNG022980|TK1151|cDNA

ATGCCAAGTGCATCACAGGTGGCAACTCAAAGTAGTGGTGGTGGTGGTGATGGTGAAAGAACTGAAACGAGAAAAGAAGTTGAAATTGAAGTGGTTAAAAGCATAGTATATGGTGGGCTAGCTGAATCTGTGACTAGCCTAAGCGTTGTGGCTTCTGCCGCTGGTGGTGGTGCCGCCACGTTGAATGTTTTAGCTCTAGGAGCTGCCAATCTCATTGGAGGATTCTTTATCATTTGCCATAATCTTTGGGATTTAAAAAA...

CDS

Download CDS FASTA

699 bp · TkAUNG022980|TK1151|CDS

ATGCCAAGTGCATCACAGGTGGCAACTCAAAGTAGTGGTGGTGGTGGTGATGGTGAAAGAACTGAAACGAGAAAAGAAGTTGAAATTGAAGTGGTTAAAAGCATAGTATATGGTGGGCTAGCTGAATCTGTGACTAGCCTAAGCGTTGTGGCTTCTGCCGCTGGTGGTGGTGCCGCCACGTTGAATGTTTTAGCTCTAGGAGCTGCCAATCTCATTGGAGGATTCTTTATCATTTGCCATAATCTTTGGGATTTAAAAAA...

Protein

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232 aa · TkAUNG022980|TK1151|PROTEIN

MPSASQVATQSSGGGGDGERTETRKEVEIEVVKSIVYGGLAESVTSLSVVASAAGGGAATLNVLALGAANLIGGFFIICHNLWDLKNHHGSEQMSNQIEEQSDRYKELLGRRQNFIFHFIVAMISYLIFGLVPPIVYGFSFRESDDQQLKLVVVGAASLLCILMLAIGKAYTQSPPKPYMKTVATYVILGFMASGVSYVAGELVERLLNKLGLFQTGPTPEMRPTGSGWASY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkAUNG022980`
TK1151 ID	TkAUNG022980
OH-1004 ID	LXL04_015354
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	57.100
Protein coverage (%)	TK1151 81.897 / OH-1004 21.529 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkAUNG022980

Location ChrUn:6181132-6182602 (+)

Description Similar to MEB1: Membrane protein of ER body 1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g27870`	Not essential for the accumulation of ER body components, including PYK10.	No verified direct reference in this release
`At4g27860`	May sequester excess cytosolic iron and manganese into endoplasmic reticulum to reduce metal ion toxicity.	Identification of two novel endoplasmic reticulum body-specific integral membrane proteins.2013 · DOI: 10.1104/pp.112.207654
`At5g24290`	May sequester excess cytosolic iron and manganese into endoplasmic reticulum to reduce metal ion toxicity.	Identification of two novel endoplasmic reticulum body-specific integral membrane proteins.2013 · DOI: 10.1104/pp.112.207654

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_015354 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009753 response to jasmonic acid Biological Process

GO:0010039 response to iron ion Biological Process

GO:0030026 intracellular manganese ion homeostasis Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005773 vacuole Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0010168 ER body Cellular Component

GO:0016020 membrane Cellular Component

KEGG gene cross-reference

ath:AT4G27860

ath:AT4G27870

ath:AT5G24290

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.804

Rank 1 · TkAUNG022980 · TK1151

Endoplasmic reticulum0.101

Rank 2 · TkAUNG022980 · TK1151

Cytoplasm0.082

Rank 3 · TkAUNG022980 · TK1151

Lysosome / Vacuole0.077

Rank 4 · TkAUNG022980 · TK1151

Golgi apparatus0.035

Rank 5 · TkAUNG022980 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01988VIT132-74 aa

PF03006HlyIII60-76 aa

PF03419Peptidase_U468-136 aa

PF25592DUF7937117-167 aa

PF01988VIT1120-201 aa

PF03006HlyIII122-199 aa

PF03419Peptidase_U4158-200 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkAUNG022980	`PF01988`	VIT1	32	74	1.3e-07	32.3
TkAUNG022980	`PF03006`	HlyIII	60	76	0.04	14.3
TkAUNG022980	`PF03419`	Peptidase_U4	68	136	0.41	10.6
TkAUNG022980	`PF25592`	DUF7937	117	167	0.13	11.8
TkAUNG022980	`PF01988`	VIT1	120	201	1.3e-07	32.3
TkAUNG022980	`PF03006`	HlyIII	122	199	0.04	14.3
TkAUNG022980	`PF03419`	Peptidase_U4	158	200	0.41	10.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q8LPT3`	Arabidopsis thaliana	sp\|Q8LPT3\|MEBL_ARATH Membrane protein of ER body-like protein	46.000%	Swiss-Prot	Medium
`Q8W4P8`	Arabidopsis thaliana	sp\|Q8W4P8\|MEB1_ARATH Membrane protein of ER body 1	46.500%	Swiss-Prot	Medium
`F4KFS7`	Arabidopsis thaliana	sp\|F4KFS7\|MEB2_ARATH Membrane protein of ER body 2	41.900%	Swiss-Prot	Medium

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