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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkAUNG018460
Reference: TK1151 Chr: ChrUn Coordinates: 4903477-4908635 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3361 bp · TkAUNG018460|TK1151|cDNA

AAATTAATCATATACATTTTTACCGTAAAAATCACACTGAAATGCGACTATGCGAGCAACAGAAGCCATGTGAGTTGTGACCACTTTGTTTCCGGTTAAGCATCGGCCTCCCTGGCGCTAAAAATCTTAAACCCTAAACCCTCTATCACTAAACCTCTCGAAGGTTCGCCTTCACCTTCGCCATGGCTTCGGTGGCGATAACCAGAAAAAATCAGCTCGTCTCTTCTCTACTCCATGGTTTCCGATGTCGAAGATCATAT...

CDS

Download CDS FASTA

2886 bp · TkAUNG018460|TK1151|CDS

ATGGCTTCGGTGGCGATAACCAGAAAAAATCAGCTCGTCTCTTCTCTACTCCATGGTTTCCGATGTCGAAGATCATATTTCCCTCGTACAATCACCACCAGCCGTCTCAGCTTTACGACGTCAACTTCCACTTCTCCGGCAGATACAGAAATTCCCGTATCCAGAACCAAAGTCCTTGAAACTTTTAAAGAAGAATTCGAAATTGGATCACGCCTGCTCACCTTAGAAACAGGGAAAATCGCGCGGTTCGCCAATGGGGC...

Protein

Download Protein FASTA

961 aa · TkAUNG018460|TK1151|PROTEIN

MASVAITRKNQLVSSLLHGFRCRRSYFPRTITTSRLSFTTSTSTSPADTEIPVSRTKVLETFKEEFEIGSRLLTLETGKIARFANGAVVLGIDDTKVLSTVCSAKGDGVRDFLPLTVDYQEKQFAQGVIPGTYMRREGAPKERELLCGRLIDRPIRPLFPAGFYHEVQVMASVLSSDGKQDPDIMAANATSAALMLSDVPWGGPIGMIRIGRIDGHLVVNPTMDELNLSDLNLVYACTKDKTLMLDVQAREISEKDLEAA...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkAUNG018460
TK1151 IDTkAUNG018460
OH-1004 IDLXL04_023961
Relationship / confidenceRbh High Identity Coverage Local Synteny Minor Chr Pair / Probable
Protein identity (%)95.700
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkAUNG018460
LocationChrUn:4903477-4908635 (+)
DescriptionSimilar to PNP2: Polyribonucleotide nucleotidyltransferase 2, mitochondrial
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g14580 Involved in the 3'-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0617700 Involved in the 3'-end maturation of mitochondrial mRNAs, rRNAs and tRNAs. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_023961 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000957 mitochondrial RNA catabolic process Biological Process
GO:0000958 mitochondrial mRNA catabolic process Biological Process
GO:0000963 mitochondrial RNA processing Biological Process
GO:0000965 mitochondrial RNA 3'-end processing Biological Process
GO:0006364 rRNA processing Biological Process
GO:0006396 RNA processing Biological Process
GO:0006397 mRNA processing Biological Process
GO:0006402 mRNA catabolic process Biological Process
GO:0008033 tRNA processing Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
KEGG gene cross-reference
ath:AT5G14580
dosa:Os02g0617700
gwc:GWCH70_1161
min:Minf_2124
tro:trd_0623
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.722
Rank 1 · TkAUNG018460 · TK1151
Plastid0.307
Rank 2 · TkAUNG018460 · TK1151
Cytoplasm0.049
Rank 3 · TkAUNG018460 · TK1151
Nucleus0.045
Rank 4 · TkAUNG018460 · TK1151
Peroxisome0.012
Rank 5 · TkAUNG018460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01138RNase_PH71-200 aa
PF03725RNase_PH_C203-265 aa
PF01138RNase_PH282-310 aa
PF03726PNPase299-378 aa
PF01138RNase_PH381-514 aa
PF03725RNase_PH_C536-581 aa
PF00013KH_1626-668 aa
PF22891KH_PNO1_2nd632-669 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkAUNG018460PF01138RNase_PH712001.2e-55188.2
TkAUNG018460PF03725RNase_PH_C2032651.2e-1454.7
TkAUNG018460PF01138RNase_PH2823101.2e-55188.2
TkAUNG018460PF03726PNPase2993787.5e-1452.7
TkAUNG018460PF01138RNase_PH3815141.2e-55188.2
TkAUNG018460PF03725RNase_PH_C5365811.2e-1454.7
TkAUNG018460PF00013KH_16266680.008516.5
TkAUNG018460PF22891KH_PNO1_2nd6326690.02215.3
TkAUNG018460PF29086OB_PDCD116827290.000919.8
TkAUNG018460PF00575S16857555.8e-1556.2
TkAUNG018460PF23459S1_RRP56877350.6111.4
TkAUNG018460PF00013KH_16947090.008516.5
TkAUNG018460PF01056Myc_N8519000.0414.4
TkAUNG018460PF03726PNPase8738897.5e-1452.7
TkAUNG018460PF29086OB_PDCD118879220.000919.8
TkAUNG018460PF00575S18949235.8e-1556.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9S7G6Arabidopsis thalianasp|Q9S7G6|PNP2_ARATH Polyribonucleotide nucleotidyltransferase 2, mitochondrial62.800%Swiss-ProtHigh
Q6KAI0Oryza sativa subsp. japonicasp|Q6KAI0|PNP2_ORYSJ Polyribonucleotide nucleotidyltransferase 2, mitochondrial63.900%Swiss-ProtHigh

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